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* gnu/packages/bioinformatics.scm (python-hic2cool)[arguments]: Fix
incompatibility with h5py 3; disable two tests.
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* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/cran.scm (r-orgmassspecr): New variable.
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* gnu/packages/bioconductor.scm (r-adductdata): New variable.
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* gnu/packages/python-web.scm (python-scrapy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-itemloaders): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-web.scm (python-parsel): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-web.scm (python-protego): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-itemadapter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-queuelib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-pydispatcher): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-check.scm (python-sybil): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/build-tools.scm (bear): Update to 3.0.19.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/logging.scm (spdlog): Update to 1.10.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/pretty-print.scm (fmt): Update to 8.1.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/apl.scm (apl)[arguments]: Use G-expressions.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/apl.scm (apl)[inputs]: Remove labels and sort.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This commit fixes a failing build caused by -Werror (the configure
script no longer sets the -Werror compilation flag).
* gnu/packages/apl.scm (apl): Update to 1.8-r1550.
[arguments]: Add 'fix-configure' phase.
[license]: Prefix with 'license:'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/emacs-xyz.scm (emacs-git-email): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/search.scm (ugrep): Update to 3.7.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/cpp.scm (aws-sdk-cpp):
[inputs]: Remove openssl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/tls.scm (s2n):
[arguments]: Fix for openssl as replacement input for aws-lc.
[propagated-inputs]: Add aws-lc and remove openssl.
[supported-systems]: Only support x86_64-linux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/tls.scm (aws-lc):
[source]: Fix checksum.
[arguments]: Enable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/cpp.scm (aws-crt-cpp): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-mqtt): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-s3): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-auth): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-compression): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-http): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-sdkutils): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-cal): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-io): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-event-stream): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-checksums): Fix comment formatting.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/c.scm (aws-c-common):
[supported-systems]: Only support i686-linux and x86_64-linux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/bioinformatics.scm (htslib-for-stringtie): Inherit from
htslib-1.12.
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* gnu/packages/python-xyz.scm (python-xlrd-1): Remove variable.
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* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): Remove variable.
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* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz-for-cooler with python-cytoolz.
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* gnu/packages/python-xyz.scm (python-anndata)[propagated-inputs]: Remove
python-xlrd-1.
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* gnu/packages/chromium.scm (%preserved-third-party-files): Include bundled
Vulkan headers.
(%chromium-version): Set to 101.0.4951.41.
(%debian-revision): Set to debian/101.0.4951.41-2.
(%debian-patches): Add one new patch.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Refresh.
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* gnu/packages/ocaml.scm (ocaml-uuidm): Update to 0.9.8.
(ocaml4.07-uuidm): New variable.
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* gnu/packages/ocaml.scm (ocamlformat): Update to 0.21.0.
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Cmdliner changed its output format, so two packages need to be modified
to accept the new format.
The patch modifies ocaml 4.07 packages to ensure this patch results in the
same derivations for these variants.
* gnu/packages/ocaml.scm (ocaml-cmdliner): Update to 1.1.0.
(ocaml-alcotest, ocaml-mdx)[arguments]: Fix tests.
(ocaml4.07-cmdliner): New variable.
(ocaml4.07-alcotest): Do not fix tests.
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* gnu/packages/ocaml.scm (ocaml-re): Update to 1.10.4.
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* gnu/packages/ocaml.scm (ocaml-spawn): Update to 0.15.1.
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* gnu/packages/ocaml.scm (ocaml-ppx-fields-conv): Update to 0.15.0.
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* gnu/packages/ocaml.scm (ocaml-parsexp): Update to 0.15.0.
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* gnu/packages/ocaml.scm (ocaml-ppx-hash): Update to 0.15.0.
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