aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages
AgeCommit message (Collapse)Author
2016-10-26gnu: r-xvector: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26gnu: r-limma: Update to 3.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26gnu: r-variantannotation: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.0. [propagated-inputs]: Add r-biobase, r-biostrings, r-iranges, r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26gnu: r-edger: Update to 3.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0. [propagated-inputs]: Add r-locfit.
2016-10-26gnu: r-genomeinfodb: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26gnu: r-iranges: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26gnu: r-s4vectors: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26gnu: r-dnacopy: Update to 1.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26gnu: r-biocinstaller: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26gnu: r-biocgenerics: Update to 0.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26gnu: r-grohmm: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26gnu: r-systempiper: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26gnu: r-shortread: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26gnu: r-gostats: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26gnu: r-category: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26gnu: r-gseabase: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
2016-10-26gnu: r-rbgl: Update to 1.50.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
2016-10-26gnu: r-annotationforge: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0. [propagated-inputs]: Add r-rcurl.
2016-10-26gnu: r-deseq2: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
2016-10-26gnu: r-genefilter: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
2016-10-26gnu: r-geneplotter: Update to 1.52.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26gnu: r-annotate: Update to 1.52.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26gnu: Add r-kernsmooth.Ricardo Wurmus
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26gnu: emacs-emms-player-mpv: Update to 0.0.10.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-25gnu: elfutils: Update to 0.167.Leo Famulari
* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].Leo Famulari
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25gnu: mupdf: Fix CVE-2016-8674.Kei Kebreau
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25gnu: coda: Remove bundled libraries.Thomas Danckaert
* gnu/packages/maths.scm (coda): Remove bundled libraries. [source]: Add patch and snippet to remove bundled zlib, pcre and expat. [inputs]: Add system zlib, pcre and expat. * gnu/packages/patches/coda-use-system-libs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24gnu: linux-libre@4.1: Update to 4.1.35.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35. Remove patch. * gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24gnu: Add coda.Thomas Danckaert
* gnu/packages/maths.scm (coda): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24gnu: Add hdf-eos2.Thomas Danckaert
* gnu/packages/maths.scm (hdf-eos2): New variable. * gnu/packages/patches/hdf-eos2-build-shared.patch: New file. * gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos2-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24gnu: Add guile-bytestructuresAmirouche
* gnu/packages/guile.scm (guile-bytestructures): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24gnu: efl: Update to 1.18.2.Efraim Flashner
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24gnu: red-eclipse: Update to 1.5.6.Kei Kebreau
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6. [arguments]: Adjust phases.
2016-10-24gnu: Add whois.ng0
* gnu/packages/networking.scm (whois): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-24gnu: gnumeric: Use 'glib-or-gtk-build-system'.宋文武
Reported by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to GLIB-OR-GTK-BUILD-SYSTEM.
2016-10-23gnu: musl: Fix CVE-2016-8859.Leo Famulari
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/musl.scm (musl)[source]: Use it.
2016-10-23gnu: windowmaker: Update to 0.95.7.Kei Kebreau
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
2016-10-23gnu: gajim: Update to 0.16.6.Arun Isaac
* gnu/packages/messaging.scm (gajim): Update to 0.16.6. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23gnu: gajim: License is "version 3 only".Arun Isaac
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23gnu: weechat: Update to 1.6.ng0
* gnu/packages/irc.scm (weechat): Update to 1.6. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23gnu: Add python-flask-sqlalchemy.Danny Milosavljevic
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
2016-10-23gnu: Add python-flask-basicauth.Danny Milosavljevic
* gnu/packages/python.scm (python-flask-basicauth): New variable.
2016-10-23gnu: Add python-flask-restful.Danny Milosavljevic
* gnu/packages/python.scm (python-flask-restful): New variable.
2016-10-23gnu: Add python-aniso8601.Danny Milosavljevic
* gnu/packages/python.scm (python-aniso8601): New variable.
2016-10-23gnu: Add bluefish.Rene Saavedra
* gnu/packages/gnome.scm (bluefish): New variable.
2016-10-23gnu: openconnect: Update to 7.07.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
2016-10-23gnu: weex: Use ‘modify-phases’.Tobias Geerinckx-Rice
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
2016-10-23gnu: Add guitarix-lv2.Ricardo Wurmus
* gnu/packages/audio.scm (guitarix-lv2): New variable.
2016-10-23gnu: Add mod-utilities.Ricardo Wurmus
* gnu/packages/music.scm (mod-utilities): New variable.
generated by cgit