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2018-08-23gnu: r-digest: Update to 0.6.16.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
2018-08-23gnu: r-dplyr: Update to 0.7.6.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
2018-08-23gnu: r-rcpp: Update to 0.12.18.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
2018-08-23gnu: duplicity: Update to 0.7.18.Tobias Geerinckx-Rice
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
2018-08-23gnu: darcs: Update to 2.14.1.Arun Isaac
* gnu/packages/version-control.scm (darcs): Update to 2.14.1. [arguments]: Add patch-sh phase. Enable tests.
2018-08-23gnu: ghc-zlib: Update to 0.6.2.Arun Isaac
* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
2018-08-23gnu: ghc-quickcheck-instances: Update to 0.3.18.Arun Isaac
* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18. [arguments]: Allow building with newer base-compat.
2018-08-23gnu: ghc-graphviz: Update to 2999.20.0.2.Arun Isaac
* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2. [native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
2018-08-23gnu: ghc-wl-pprint-text: Update to 1.2.0.0.Arun Isaac
* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0. [inputs]: Add ghc-base-compat.
2018-08-23gnu: ghc-base-compat: Update to 0.10.4.Arun Isaac
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
2018-08-23gnu: ghc-fgl-arbitrary: Allow building with newer hspec.Arun Isaac
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with newer hspec.
2018-08-23gnu: ghc-shelly: Update to 1.8.1.Arun Isaac
* gnu/packages/haskell.scm (ghc-shelly): Update to 1.8.1. [inputs]: Add ghc-hspec-contrib.
2018-08-23gnu: ghc-sandi: Update to 0.4.2.Arun Isaac
* gnu/packages/haskell.scm (ghc-sandi): Update to 0.4.2.
2018-08-23gnu: ghc-fgl: Update to 5.6.0.0.Arun Isaac
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.6.0.0. [arguments]: Allow building with newer hspec.
2018-08-23gnu: guile-redis: Remove duplicate 'home-page' field.Mark H Weaver
* gnu/packages/guile.scm (guile-redis): Remove duplicate 'home-page' field.
2018-08-23gnu: guile-gcrypt: Remove duplicate 'home-page' field.Mark H Weaver
This is a followup to commit b0cb92b2d43a2c4d5fa9b3f8c04c5732c60061e7. * gnu/packages/gnupg.scm (guile-gcrypt): Remove duplicate 'home-page' field.
2018-08-23gnu: linux-libre: Update to 4.18.4.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.4. (%linux-libre-hash): Update hash.
2018-08-23gnu: linux-libre@4.14: Update to 4.14.66.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.66. (%linux-libre-4.14-hash): Update hash.
2018-08-23gnu: linux-libre@4.9: Update to 4.9.123.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.123.
2018-08-23gnu: linux-libre@4.4: Update to 4.4.151.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.151.
2018-08-23gnu: Add guile-gcrypt.Ludovic Courtès
* gnu/packages/gnupg.scm (guile-gcrypt): New variable.
2018-08-22gnu: perl-dbd-mysql: Update to 4.046.Leo Famulari
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046. [source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'. * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22gnu: python-pkgconfig: Enable tests.Paul Garlick
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22gnu: python-pkgconfig: Update to 1.3.1.Paul Garlick
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}.Leo Famulari
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch, gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/audio.scm (soundtouch)[source]: Use them.
2018-08-22gnu: soundtouch: Update to 2.0.0.Leo Famulari
* gnu/packages/audio.scm (soundtouch): Update to 2.0.0.
2018-08-22gnu: ImageMagick: Update to 6.9.10-10.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
2018-08-22gnu: GraphicsMagick: Update to 1.3.30.Leo Famulari
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
2018-08-22gnu: r-fpc: Update to 2.1-11.1.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
2018-08-22gnu: r-survival: Update to 2.42-6.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
2018-08-22gnu: Add sqlcrush.Tobias Geerinckx-Rice
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22gnu: Add python-pymysql.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New public variables.
2018-08-21gnu: luakit: Fix crash on startup.Raphaël Mélotte
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the wrapping phase. This fixes a crash when no configuration file is present in the user's home directory. It allows luakit to use it's own default configuration files. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-21gnu: guile-ssh: Don't build libguile-ssh.a.Ludovic Courtès
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
2018-08-21gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].Leo Famulari
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21gnu: python-paramiko: Add some missing dependencies.Leo Famulari
* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
2018-08-21gnu: asymptote: Use minimal texlive-union.Pierre Neidhardt
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
2018-08-21gnu: texlive-latex-base: Include support files.Pierre Neidhardt
* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
2018-08-21gnu: mit-scheme: Use minimal texlive-union.Pierre Neidhardt
* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
2018-08-21gnu: sl: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-21gnu: python-rpy2: Update to 2.9.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4. [arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM* now that we can.
2018-08-21gnu: python-rpy2: Update home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-21gnu: r-iterators: Update to 1.0.10.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
2018-08-21gnu: r-foreign: Update to 0.8-71.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
2018-08-21gnu: r-openssl: Update to 1.0.2.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
2018-08-21gnu: r-modeltools: Update to 0.2-22.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
2018-08-20gnu: mysql: Update to 5.7.23.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20gnu: mysql: Fix build.Tobias Geerinckx-Rice
MySQL demands boost@1.59.0, and lying about it no longer works: sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’: sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &) ^ [...] * gnu/packages/databases.scm (boost-for-mysql): New variable. (mysql)[inputs]: Use that instead of the regular boost. [arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20gnu: python-pyodbc: Update to 4.0.24.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20gnu: python-mysqlclient: Update to 1.3.13.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
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