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2018-07-29gnu: mcrl2: Build with modular qt.Efraim Flashner
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
2018-07-29gnu: Remove duplicated python-pafy.Christopher Baines
It was first added in 02f8f804f0242df885311715412a1e3ee5436f3b, then again in 2dd12924cf4a30a96262b6d392fcde58c9f10d4b. * gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
2018-07-29gnu: Remove duplicated perl-extutils-depends.Christopher Baines
This was first added in 84e8b19fe150ae843d63ca7343aa7172f35153f3, and then again in 017b014ce4a5defed12836886c4dfe2c5ae89d2d. * gnu/packages/perl.scm (perl-extutils-depends): Remove duplicated package definition.
2018-07-29gnu: Remove duplicated ghc-time-locale-compat.Christopher Baines
It was first added in 5e51bcf7b38511d943f4d24621be5817144061cd, then again in c56a30b3ba3e1e93ced3c6ba2cfb4c738b805074. * gnu/packages/haskell.scm (ghc-time-locale-compat): Remove duplicated package definition.
2018-07-29gnu: Remove duplicated ghc-th-lift-instances.Christopher Baines
It was first added in a6d1c4e75a76399c8d82a9570db5cd14351f661b, then again in ff7dd11f0a4fd6ca947cfa40cec42628fde44667. * gnu/packages/haskell.scm (ghc-th-lift-instances): Remove duplicated package definition.
2018-07-29gnu: Remove duplicated r-psych package.Christopher Baines
It was first added in cdc129dc53b1c04e9a6577f7d2b9641a0a03c32f, then again in db80dd4a1d7e2371bc3c300f48b84a817adb3550. * gnu/packages/cran.scm (r-psych): Remove duplicated package definition.
2018-07-29gnu: Remove duplicated emacs-load-relative.Christopher Baines
It was first added in fa1a17b78631681a23ae1fb7b1f902148bbebdbb, and then again in f8a88f223ea2ac36576cd92f457790df5a6f2408. * gnu/packages/emacs.scm (emacs-load-relative): Remove duplicated package definition.
2018-07-29gnu: Remove duplicated emacs-csv-mode.Christopher Baines
It was first added in 9faa46ee48d12bf55355805a84a7c533f904a39d, and then again in 8bc8efc753605e404c1efcdc5b53a780feb0760c. * gnu/packages/emacs.scm (emacs-csv-mode): Remove duplicated package definition.
2018-07-29gnu: taxtastic: Add missing propagated-inputs.Ben Woodcroft
* gnu/packages/bioinformatics.scm (taxtastic)[propagated-inputs]: Add python-psycopg2, python-fastalite, python-pyyaml, python-six, python-jinja2, python-dendropy.
2018-07-29gnu: python-dendropy: Update to 4.4.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): Update to 4.4.0. [source]: Use GitHub URI. Remove patch. [properties]: Remove field. (python2-dendropy)[arguments]: Run tests with setup.py. [native-inputs]: Remove 'python2-nose. * gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Delete it.
2018-07-29gnu: python2-psycopg2: Update to 2.7.5.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
2018-07-29gnu: Add python-fastalite.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite): New variables.
2018-07-29gnu: Add chroma.Christopher Lemmer Webber
* gnu/packages/games.scm (chroma): New variable.
2018-07-29gnu: linux-libre: Update to 4.17.11.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11. (%linux-libre-hash): Update hash.
2018-07-29gnu: linux-libre@4.14: Update to 4.14.59.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59. (%linux-libre-4.14-hash): Update hash.
2018-07-29gnu: linux-libre@4.9: Update to 4.9.116.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
2018-07-29gnu: linux-libre@4.4: Update to 4.4.145.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
2018-07-29gnu: clojure: Fix index generation.Gábor Boskovits
* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove offending directory entry making indexing fail.
2018-07-28gnu: openlibm: Update to 0.6.0.Marius Bakke
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
2018-07-28gnu: glm: Update home page.Marius Bakke
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
2018-07-28gnu: glm: Update to 0.9.9.0.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.0. [source](uri): Change to new download location.
2018-07-28gnu: libjpeg-turbo: Update license.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
2018-07-28gnu: libjpeg-turbo: Update to 2.0.0.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0. [build-system]: Change to CMAKE-BUILD-SYSTEM. [arguments]: Adjust accordingly.
2018-07-28gnu: accountsservice: Update to 0.6.50.Marius Bakke
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50. [arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags. [inputs]: Add ELOGIND.
2018-07-28gnu: dconf: Update to 0.28.0.Marius Bakke
* gnu/packages/gnome.scm (dconf): Update to 0.28.0. [build-system]: Switch to MESON-BUILD-SYSTEM. [arguments]: Adjust accordingly. [native-inputs]: Add VALA and GLIB:BIN.
2018-07-28gnu: dconf: Update license.Marius Bakke
* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
2018-07-28gnu: dconf: Install GTK documentation.Marius Bakke
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC. [arguments]: Adjust #:configure-flags accordingly.
2018-07-28gnu: dconf: Adjust inputs and remove obsolete workaround.Marius Bakke
* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2. [propagated-inputs]: Add GLIB. [native-inputs]: Add LIBXML2. Remove INTLTOOL. [arguments]: Remove #:phases.
2018-07-28gnu: x265: Fix compilation on ARMv7.Ludovic Courtès
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file. * gnu/packages/video.scm (x265)[sources](patches): Add it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-28gnu: mariadb: Work around GCC ICE on armhf-linux.Ludovic Courtès
* gnu/packages/patches/mariadb-gcc-ice.patch: New file. * gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add 'apply-patch' phase. [native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-27gnu: allegro: Update to 5.2.4.0.Kei Kebreau
* gnu/packages/game-development.scm (allegro): Update to 5.2.4.0. [source]: Update URL.
2018-07-27gnu: gcc@8: Update to 8.2.0.Ludovic Courtès
* gnu/packages/gcc.scm (gcc-8): Update to 8.2.0.
2018-07-27gnu: Add font-blackfoundry-inria.Ludovic Courtès
* gnu/packages/fonts.scm (font-blackfoundry-inria): New file.
2018-07-27gnu: emacs-flycheck: Don't rely on pkg-info.el for 'flycheck-version'.Ludovic Courtès
* gnu/packages/emacs.scm (flycheck)[source]: Add 'modules' and 'snippet'.
2018-07-27gnu: pigx-scrnaseq: Disable another expensive test.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Disable multiqc test.
2018-07-27gnu: Add snakemake-4.Ricardo Wurmus
* gnu/packages/python.scm (snakemake-4): New variable. * gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq, pigx-chipseq)[inputs]: Use it.
2018-07-27gnu: snakemake: Add missing dependencies.Ricardo Wurmus
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie, python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27gnu: Add python-datrie.Ricardo Wurmus
* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27gnu: imagemagick: Update to 6.9.10-8.Marius Bakke
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
2018-07-27gnu: mbedtls-apache: Update to 2.7.5.Marius Bakke
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
2018-07-27gnu: snakemake: Update to 5.2.0.Ricardo Wurmus
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-27gnu: guile-sdl2: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0. [arguments]: Remove "patch-makefile" phase.
2018-07-27gnu: tiled: Update to 1.1.6.Kei Kebreau
* gnu/packages/game-development.scm (tiled): Update to 1.1.6. [arguments]: Substitute invoke for system*.
2018-07-26gnu: python-xsge: Update to 2018.02.26.Kei Kebreau
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to 2018.02.26. [arguments]: Substitute invoke for system*.
2018-07-26gnu: freeciv: Update to 2.6.0.Kei Kebreau
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
2018-07-26gnu: ecryptfs-utils: Patch more hardcoded paths.Brendan Tildesley
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file to be patched that was missing in the last fix. Ecryptfs will now find the umount binary path as well as mount and others. Re-sort the list of files to be substituted. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-26gnu: cabextract: Delete bundled libmspack.Marius Bakke
* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
2018-07-26gnu: cabextract: Update to 1.7.Marius Bakke
* gnu/packages/compression.scm (cabextract): Update to 1.7.
2018-07-26gnu: fuse: Update source hash.Marius Bakke
The fuse 2.9.8 tarball and signature was modified in place. Both are signed by the same key, at different dates, and the only differences are directory timestamps and a ChangeLog update. * gnu/packages/linux.scm (fuse)[source](sha256): Update.
2018-07-26gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin".Danny Milosavljevic
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases> [install]: Don't install "sunxi-spl-with-ecc.bin".
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