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2018-09-11gnu: snakemake: Update home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (snakemake)[home-page]: Update.
2018-09-11gnu: snakemake: Update to 5.2.2.Tobias Geerinckx-Rice
* gnu/packages/python.scm (snakemake): Update to 5.2.2.
2018-09-10gnu: python-binaryornot: Update to 0.4.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.
2018-09-10gnu: python-parse: Update to 1.8.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-parse): Update to 1.8.4.
2018-09-10gnu: python-parse: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-parse)[description]: Use @code{}.
2018-09-10gnu: python-jedi: Update to 0.12.1.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-jedi): Update to 0.12.1. [synopsis, description]: Adjust to expanded functionality.
2018-09-10gnu: python-parso: Update to 0.3.1.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-parso): Update to 0.3.1.
2018-09-10gnu: python-debian: Update home page.Marius Bakke
* gnu/packages/python.scm (python-debian)[home-page]: Set to source repository.
2018-09-10gnu: python-libarchive-c: Update to 2.8.Marius Bakke
* gnu/packages/python.scm (python-libarchive-c): Update to 2.8. [arguments]: Replace 'check' phase. [native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.
2018-09-10gnu: python-tlsh: Update to 3.4.5.Marius Bakke
* gnu/packages/python.scm (python-tlsh): Update to 3.4.5.
2018-09-10gnu: Add python-dask.Ricardo Wurmus
* gnu/packages/python.scm (python-dask): New variable.
2018-09-10gnu: Add python-partd.Ricardo Wurmus
* gnu/packages/python.scm (python-partd): New variable.
2018-09-10gnu: Add python-blosc.Ricardo Wurmus
* gnu/packages/python.scm (python-blosc): New variable.
2018-09-10gnu: Add python-locket.Ricardo Wurmus
* gnu/packages/python.scm (python-locket): New variable.
2018-09-10gnu: Add python-cloudpickle.Ricardo Wurmus
* gnu/packages/python.scm (python-cloudpickle): New variable.
2018-09-10gnu: Add python-sortedcontainers.Ricardo Wurmus
* gnu/packages/python.scm (python-sortedcontainers): New variable.
2018-09-10gnu: Add python-cytoolz.Ricardo Wurmus
* gnu/packages/python.scm (python-cytoolz): New variable.
2018-09-10gnu: Add python-toolz.Ricardo Wurmus
* gnu/packages/python.scm (python-toolz): New variable.
2018-09-10gnu: Add python-multiprocess.Ricardo Wurmus
* gnu/packages/python.scm (python-multiprocess): New variable.
2018-09-10gnu: Add python-dill.Ricardo Wurmus
* gnu/packages/python.scm (python-dill): New variable.
2018-09-10gnu: python-typing: Update to 3.6.6.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
2018-09-05gnu: python-tables: Update to 3.4.4.Ricardo Wurmus
* gnu/packages/python.scm (python-tables): Update to 3.4.4.
2018-09-03gnu: python-matplotlib: Update to 2.2.3.Marius Bakke
* gnu/packages/python.scm (python-matplotlib): Update to 2.2.3.
2018-09-03gnu: python-scipy: Disable broken tests.Ricardo Wurmus
* gnu/packages/python.scm (python-scipy)[arguments]: Skip two broken tests.
2018-08-31gnu: python-matplotlib: Use python-pyqt-without-qtwebkit.Ricardo Wurmus
* gnu/packages/python.scm (python-matplotlib)[propagated-inputs]: Replace python-pyqt with python-pyqt-without-qtwebkit.
2018-08-29gnu: Add python-anndata.Ricardo Wurmus
* gnu/packages/python.scm (python-anndata): New variable.
2018-08-29gnu: Add python-numba.Ricardo Wurmus
* gnu/packages/python.scm (python-numba): New variable.
2018-08-28gnu: python-apipkg: Update home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
2018-08-27gnu: python-pygit2: Update to 0.26.4.Leo Famulari
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4. [source]: Remove 'python-pygit2-disable-network-tests.patch'. * gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22gnu: python-pkgconfig: Enable tests.Paul Garlick
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22gnu: python-pkgconfig: Update to 1.3.1.Paul Garlick
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-21gnu: python-rpy2: Update to 2.9.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4. [arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM* now that we can.
2018-08-21gnu: python-rpy2: Update home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-20gnu: python-py: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
2018-08-16Merge branch 'master' into stagingMarius Bakke
2018-08-16gnu: python-cython: Disable tests that fail on armhf.Marius Bakke
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add phase to disable two tests.
2018-08-16gnu: Add python-argparse-manpage.Ricardo Wurmus
* gnu/packages/python.scm (python-argparse-manpage): New variable.
2018-08-15gnu: python-txamqp: Update to 0.8.2.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-txamqp): Update to 0.8.2.
2018-08-13gnu: python-pep8: Use HTTPS home page.Tobias Geerinckx-Rice
Also add a comment about 1.7.1. This doesn't warrant a changelog entry, so you never read this. * gnu/packages/python.scm (python-pep8)[home-page]: Use HTTPS.
2018-08-07Merge branch 'master' into stagingMarius Bakke
2018-08-03gnu: python-scipy: Only run default tests.Ricardo Wurmus
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test suite. The full test suite is too expensive and brittle.
2018-07-30Merge branch 'master' into stagingMarius Bakke
2018-07-29gnu: Remove duplicated python-pafy.Christopher Baines
It was first added in 02f8f804f0242df885311715412a1e3ee5436f3b, then again in 2dd12924cf4a30a96262b6d392fcde58c9f10d4b. * gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
2018-07-28Merge branch 'master' into stagingMarius Bakke
2018-07-27gnu: Add snakemake-4.Ricardo Wurmus
* gnu/packages/python.scm (snakemake-4): New variable. * gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq, pigx-chipseq)[inputs]: Use it.
2018-07-27gnu: snakemake: Add missing dependencies.Ricardo Wurmus
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie, python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27gnu: Add python-datrie.Ricardo Wurmus
* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27gnu: snakemake: Update to 5.2.0.Ricardo Wurmus
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-19gnu: Cython: Update to 0.28.4.Leo Famulari
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4. [arguments]: Use invoke.
2018-07-16gnu: python-cairocffi: Fix loading of shared libraries.Danny Milosavljevic
Fixes <https://bugs.gnu.org/32170>. * gnu/packages/patches/python-cairocffi-dlopen-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-cairocffi)[inputs]: Add glib, gtk+, pango. [native-inputs]: Add python-pytest. [arguments]: Enable tests. [arguments]<#:phases>[patch-paths]: New phase.
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