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2021-03-24Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2021-03-23gnu: python2-widgetsnbextension: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-widgetsnbextension): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-utils: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-utils): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-tables: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-tables): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-stem: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-stem): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-sh: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-sh): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-ipywidgets: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-ipywidgets): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-graphql-core: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-graphql-core): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-dulwich: Remove package.zimoun
* gnu/packages/python-xyz.scm (python2-dulwich): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-23gnu: python2-cairocffi: Remove.zimoun
* gnu/packages/python-xyz.scm (python2-cairocffi): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-03-24gnu: python-pygments: Update to 2.8.1 [security fixes].Léo Le Bouter
Fixes at least CVE-2021-20270. * gnu/packages/python-xyz.scm (python-pygments): Update to 2.8.1.
2021-03-21gnu: python-pygithub: Update to 1.54.1.Efraim Flashner
* gnu/packages/python-xyz.scm (python-pygithub): Update to 1.54.1. [arguments]: Remove 'disable-failing-tests, 'prepare-for-tests phases. Add custom 'check phase. [propagated-inputs]: Add python-cryptography. [native-inputs]: Add python-httpretty, python-pytest.
2021-03-21gnu: python-pikepdf: Update to 2.9.1.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.1.
2021-03-17gnu: python-pygments: Update to 2.7.4 [fixes CVE-2021-27291].Léo Le Bouter
* gnu/packages/python-xyz.scm (python-pygments/fixed): New variable. (python-pygments)[replacement]: Graft.
2021-03-17gnu: Use PACKAGE/INHERIT in more places.Mark H Weaver
* gnu/packages/algebra.scm (fftwf, fftw-openmpi), gnu/packages/audio.scm (ztoolkit-rsvg), gnu/packages/bioinformatics.scm (python2-dendropy), gnu/packages/boost.scm (boost-with-python2), gnu/packages/check.scm (python2-mock, python2-pytest-mock), gnu/packages/cups.scm (hplip-minimal), gnu/packages/freedesktop.scm (libinput-minimal), gnu/packages/gettext.scm (gnu-gettext), gnu/packages/glib.scm (python2-pygobject), gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi), gnu/packages/groff.scm (groff-minimal), gnu/packages/jami.scm (ffmpeg-jami), gnu/packages/libcanberra.scm (libcanberra/gtk+-2), gnu/packages/lirc.scm (python2-lirc), gnu/packages/llvm.scm (clang-runtime-3.5), gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple), gnu/packages/node.scm (libnode), gnu/packages/onc-rpc.scm (libtirpc/hurd), gnu/packages/python-compression.scm (bitshuffle-for-snappy), gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography) (python2-cryptography, python2-m2crypto), gnu/packages/python-web.scm (python2-html2text, python2-tornado) (python2-terminado, python2-ndg-httpsclient, python2-websocket-client) (python2-rauth, python2-url, python2-s3transfer), gnu/packages/python-xyz.scm (python2-psutil, python2-serpent) (python2-humanfriendly, python2-empy, python2-parse-type, python2-polib) (python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc) (python2-ipyparallel, python2-traitlets, python2-dbus) (python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse) (python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal) (python2-contextlib2, python2-promise, python2-anyjson, python2-amqp) (python2-kombu, python2-billiard, python2-celery, python2-whoosh) (python2-jellyfish, python-rope, ptpython-2, python2-binaryornot) (python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort) (python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash) (python2-cloudpickle, python2-reparser), gnu/packages/python.scm (python2-called-python), gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt) (python-qscintilla, python-pyqt+qscintilla), gnu/packages/scanner.scm (sane-backends), gnu/packages/sdl.scm (guile3.0-sdl2), gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc) (python-sepolgen, policycoreutils), gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack), gnu/packages/simulation.scm (fenics), gnu/packages/statistics.scm (python2-statsmodels), gnu/packages/texinfo.scm (info-reader), gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1), gnu/packages/xml.scm (xmlsec-nss), gnu/packages/xorg.scm (uim-gtk, uim-qt), guix/build-system/python.scm (package-with-explicit-python) (strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-16gnu: snakemake: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add python-nbformat, python-pulp, and python-toposort.
2021-03-16gnu: Add python-toposort.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-toposort): New variable.
2021-03-16gnu: Add python-pulp.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pulp): New variable.
2021-03-16gnu: Add python-amply.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-amply): New variable.
2021-03-16gnu: python-pikepdf: Update to 2.9.0.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
2021-03-16gnu: glances: Update to 3.1.6.Stefan Reichör
* gnu/packages/python-xyz.scm (glances): Update to 3.1.6. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-15gnu: poetry: Update to 1.1.5.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.5. Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-15gnu: Add python-lmfit.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-lmfit): New variable.
2021-03-15gnu: Add python-asteval.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-asteval): New variable.
2021-03-15gnu: Add python-uncertainties.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-uncertainties): New variable.
2021-03-14gnu: python-eventlet: Add missing dependencies.Eric Bavier
* gnu/packages/python-xyz.scm (python-eventlet)[propagated-inputs]: Add python-dnspython and python-monotonic.
2021-03-14gnu: Add python-bidict.Eric Bavier
* gnu/packages/python-xyz.scm (python-bidict): New variable.
2021-03-14gnu: Add python-sortedcollections.Eric Bavier
* gnu/packages/python-xyz.scm (python-sortedcollections): New variable.
2021-03-13gnu: Add python-pooch.Vinicius Monego
* gnu/packages/python-xyz.scm (python-pooch): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-13gnu: Add python-click-default-group.LibreMiami
* /gnu/packages/python-xyz.scm (python-click-default-group): New variable. Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name> Co-authored-by: jgart <jgart@dismail.de> Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-12gnu: snakemake: Update to 5.32.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (snakemake): Update to 5.32.2. [arguments]: Adjust patch in call-wrapper-not-wrapped-snakemake.
2021-03-10gnu: python-pikepdf: Update to 2.8.0.post2.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.post2.
2021-03-10gnu: python-aiofiles: Update to 0.6.0.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-aiofiles): Update to 0.6.0.
2021-03-10gnu: python-ujson: Update to 4.0.2.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-ujson): Update to 4.0.2.
2021-03-10gnu: python-shouldbe: Remove.Lars-Dominik Braun
Unmaintained upstream and its only dependent (python-gssapi) dropped it. * gnu/packages/patches/python-shouldbe-0.1.2-cpy3.8.patch: Remove. * gnu/local.mk: Drop patch file. * gnu/packages/python-xyz.scm (python-shouldbe): Remove.
2021-03-10gnu: python-gssapi: Update to 1.6.12.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-gssapi) [version]: Update to 1.6.12. [arguments]: Tests have been fixed upstream, remove. [native-inputs]: python-shouldbea is not required any more, remove.
2021-03-09gnu: python-logwrap: Update to 8.2.0.post0.Efraim Flashner
* gnu/packages/python-xyz.scm (python-logwrap): Update to 8.2.0.post0. [arguments]: Disable tests. Replace 'check phase. [propagated-inputs]: Remove python-six, python-typing. [native-inputs]: Remove unzip, python-pytest-cov, python-pytest-runner. Add python-setuptools-scm, python-toml, python-wheel. [home-page]: Update to new upstream URI.
2021-03-07gnu: python-pikepdf: Update to 2.8.0.post1.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.post1.
2021-03-06Merge branch 'master' into core-updatesChristopher Baines
2021-03-06gnu: Add python-listparser.Léo Le Bouter
* gnu/packages/python-xyz.scm (python-listparser): New variable.
2021-03-06gnu: Add python-readability.Léo Le Bouter
* gnu/packages/python-xyz.scm (python-readability): New variable.
2021-03-04gnu: python-jedi: Allow test phase to be skipped.Efraim Flashner
* gnu/packages/python-xyz.scm (python-jedi)[arguments]: Wrap custom 'check phase tests with check for tests? keyword.
2021-03-03gnu: python-pillow: Update to 8.1.1 [security fixes].Léo Le Bouter
* gnu/packages/python-xyz.scm (python-pillow): Update to 8.1.1.
2021-03-02gnu: Add python-jinja2-cli.Ellis Kenyő
* gnu/packages/python-xyz.scm (python-jinja2-cli): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: python-matplotlib: Fix running under Wayland with GTK3.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch. * gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-03-02gnu: python-pikepdf: Update to 2.8.0.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.
2021-03-01gnu: python-pysaml2: Update to 6.5.1 [fixes CVE-2021-21238, CVE-2021-21239].Léo Le Bouter
* gnu/packages/python-xyz.scm (python-pysaml2): Update to 6.5.1.
2021-02-28gnu: python-rstr: Update home page.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-rstr)[home-page]: Update URI.
2021-02-28gnu: python-qtconsole: Use HTTPS home page URI.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-qtconsole)[home-page]: Use HTTPS URI.
2021-02-28gnu: python-pylzma: Use HTTPS home page URI.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pylzma)[home-page]: Use HTTPS URI.
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