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2018-06-08gnu: rcas-web: Update to 0.0.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.0.5.
2018-06-07gnu: r-rcas: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0. [source]: Fetch from bioconductor. [native-inputs]: Remove r-knitr. [propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi, r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
2018-06-07gnu: star: Update to 2.6.0c.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c. [source]: Fetch from git.
2018-06-05Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-05gnu: Add sjcount.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sjcount): New variable.
2018-06-05gnu: dropseq-tools: Remove failing phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete "generate-jar-indices" phase.
2018-06-05gnu: pigx-scrnaseq: Use only one variant of Picard.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace "java-picard" with "java-picard-2.10.3".
2018-06-05gnu: java-picard: Delete failing build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete "generate-jar-indices" phase.
2018-06-05gnu: java-picard-1.113: Delete failing build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete "generate-jar-indices" build phase.
2018-06-05gnu: java-picard-2.10.3: Delete failing build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete generate-jar-indices phase.
2018-06-05Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-05gnu: r-rtracklayer: Update to 1.40.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
2018-06-05gnu: r-methylkit: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
2018-06-05gnu: r-bamsignals: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
2018-06-02Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-02gnu: r-scater: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0. [propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove r-matrixstats and r-biomart.
2018-06-02gnu: r-scran: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2. [propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02gnu: r-delayedmatrixstats: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02gnu: r-singlecellexperiment: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02gnu: r-beachmat: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1. [inputs]: Add zlib.
2018-06-02gnu: r-rhdf5lib: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1. [arguments]: Adjust substitutions.
2018-06-02gnu: r-hdf5array: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02gnu: r-qvalue: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02gnu: r-hitc: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02gnu: r-fithic: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02gnu: r-sushi: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02gnu: r-gwascat: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02gnu: r-gviz: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02gnu: r-gqtlstats: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0. [propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02gnu: r-ldblock: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0. [propagated-inputs]: Add r-biocgenerics.
2018-06-02gnu: r-erma: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0. [propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and r-iranges.
2018-06-02gnu: r-snpstats: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02gnu: r-gqtlbase: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02gnu: r-ggbio: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02gnu: r-biovizbase: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02gnu: r-organismdbi: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02gnu: r-ensembldb: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1. [propagated-inputs]: Remove r-annotationhub.
2018-06-02gnu: r-dirichletmultinomial: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02gnu: r-complexheatmap: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02gnu: r-genomicfiles: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
2018-06-02gnu: r-gage: Update to 2.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
2018-06-02gnu: r-keggrest: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
2018-06-02gnu: r-fastseg: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
2018-06-02gnu: r-annotationhub: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
2018-06-02gnu: r-interactivedisplaybase: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02gnu: r-edaseq: Update to 2.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02gnu: r-deseq: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02gnu: r-aroma-light: Update to 3.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02gnu: r-msnid: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02gnu: r-msnbase: Update to 2.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1. [propagated-inputs]: Add r-mass and r-scales.
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