| Age | Commit message (Expand) | Author |
|---|
| 2016-06-05 | gnu: Use full SHA1 commit ids....* gnu/packages/bioinformatics.scm (pbtranscript-tofu, mosaik,
smithlab-cpp, piranha): Use full SHA1 commit ids.
* gnu/packages/ci.scm (hydra): Likewise.
* gnu/packages/compression.scm (sfarkxtc): Likewise.
* gnu/packages/emacs.scm (emacs-ob-ipython): Likewise.
* gnu/packages/games.scm (mars, emulation-station): Likewise.
* gnu/packages/gnunet.scm (guile-gnunet): Likewise.
* gnu/packages/music.scm (non-sequencer): Likewise.
* gnu/packages/version-control.scm (git-flow, git-test-sequence): Likewise.
* gnu/packages/xorg.scm (xf86-video-intel): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Hartmut Goebel |
| 2016-06-04 | gnu: diamond: Update to 0.8.5....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.5.
| Ben Woodcroft |
| 2016-05-31 | gnu: Add r-genomationdata....* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
| Ricardo Wurmus |
| 2016-05-28 | gnu: Update diamond to 0.8.3....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.3.
| Ben Woodcroft |
| 2016-05-23 | gnu: Add ParDRe....* gnu/packages/bioinformatics.scm (pardre): New variable.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-genomation: Update to 1.4.2....* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-genomicfeatures: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-summarizedexperiment: Update to 1.2.2....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-biocparallel: Update to 1.6.2....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-annotationdbi: Update to 1.34.2....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-variantannotation: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
| Ricardo Wurmus |
| 2016-05-20 | gnu: r-genomeinfodb: Update to 1.8.1....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
| Ricardo Wurmus |
| 2016-05-18 | gnu: diamond: Do not specify target architecture....* gnu/packages/bioinformatics.scm (diamond)[arguments]: Do not
specify target architecture.
| Ben Woodcroft |
| 2016-05-18 | gnu: Add Piranha....* gnu/packages/bioinformatics.scm (piranha): New variable.
| Ricardo Wurmus |
| 2016-05-17 | gnu: sortmerna: Update to 2.1b....* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
| Ben Woodcroft |
| 2016-05-17 | gnu: vsearch: Update to 1.11.1....* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
| Ben Woodcroft |
| 2016-05-17 | gnu: diamond: Update to 0.8.1....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
| Ben Woodcroft |
| 2016-05-16 | gnu: r-zlibbioc: Update to 1.18.0....* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-motifrg: Update to 1.16.0....* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.16.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-seqlogo: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.38.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-genomation: Update to 1.4.0....* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-seqpattern: Update to 1.4.0....* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.4.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-impute: Update to 1.46.0....* gnu/packages/bioinformatics.scm (r-impute): Update to 1.46.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-bsgenome: Update to 1.40.0....* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-topgo: Update to 2.24.0....* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.24.0.
[propagated-inputs]: Add r-matrixstats.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-graph: Update to 1.50.0....* gnu/packages/bioinformatics.scm (r-graph): Update to 1.50.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-genomicfeatures: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-rtracklayer: Update to 1.32.0....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-genomicalignments: Update to 1.8.0....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-summarizedexperiment: Update to 1.2.0....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-rsamtools: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.24.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-biostrings: Update to 2.40.0....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-biocparallel: Update to 1.6.0....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-biomart: Update to 2.28.0....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-annotationdbi: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-biobase: Update to 2.32.0....* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-genomicranges: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-xvector: Update to 0.12.0....* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-variantannotation: Update to 1.18.0....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.18.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-genomeinfodb: Update to 1.8.0....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-iranges: Update to 2.6.0....* gnu/packages/bioinformatics (r-iranges): Update to 2.6.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-s4vectors: Update to 0.10.0....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-dnacopy: Update to 1.46.0....* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.46.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: r-biocgenerics: Update to 0.18.0....* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.18.0.
| Ricardo Wurmus |
| 2016-05-16 | gnu: hmmer: Update urls....* gnu/packages/bioinformatics.scm (hmmer)[source]: Project has moved to
eddylab, with their downloads.
[home-page]: Update to new homepage.
| Efraim Flashner |
| 2016-05-12 | gnu: Update module imports for asciidoc and doxygen....This is a followup to commit 0573a923def01e54bf104e0015ade44ab42f694f.
* gnu/packages/algebra.scm, gnu/packages/bioinformatics.scm,
gnu/packages/fcitx.scm, gnu/packages/fish.scm,
gnu/packages/freedesktop.scm, gnu/packages/game-development.scm,
gnu/packages/gcc.scm, gnu/packages/graphics.scm, gnu/packages/image.scm,
gnu/packages/kodi.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/messaging.scm,
gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/rdf.scm,
gnu/packages/serialization.scm, gnu/packages/version-control.scm,
gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xiph.scm: Change imports of (gnu packages asciidoc) or
(gnu packages doxygen) to (gnu packages documentation).
| Mark H Weaver |
| 2016-05-04 | gnu: edirect: Update to 4.10....* gnu/packages/bioinformatics.scm (edirect): Update to 4.10.
| Ricardo Wurmus |
| 2016-04-30 | gnu: Add muscle....* gnu/packages/bioinformatics.scm (muscle): New variable.
| Ben Woodcroft |
| 2016-04-26 | gnu: r-acsnminer: Update to 0.16.01.29....* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.01.29.
| Ricardo Wurmus |
| 2016-04-26 | gnu: r-qtl: Update to 1.39-5....* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.39-5.
| Ricardo Wurmus |
