| Age | Commit message (Expand) | Author |
|---|
| 2024-12-03 | gnu: Add r-methylaiddata....* gnu/packages/bioconductor.scm (r-methylaiddata): New variable.
Change-Id: I7711a18b6a5d8e7a431d6a3c713bb3fa26a12e96
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-methylaid: Add missing inputs....* gnu/packages/bioconductor.scm (r-methylaid)[native-inputs]: Add r-geoquery,
r-minfidata, and r-minfidataepic.
[properties]: Tell updater to ignore r-methylaiddata.
Change-Id: I11b0e7e76e5ccf4768165634aae86b45606abe40
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-minfidataepic....* gnu/packages/bioconductor.scm (r-minfidataepic): New variable.
Change-Id: Icce76beb123c0ad45bac09ec88a259b1b271141f
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-illuminahumanmethylationepicanno-ilm10b2-hg19....* gnu/packages/bioconductor.scm
(r-illuminahumanmethylationepicanno-ilm10b2-hg19): New variable.
Change-Id: I110d1b71fa45bc1c5e81399de0a89aab99d45031
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-escape: Add missing input....* gnu/packages/bioconductor.scm (r-escape)[native-inputs]: Add r-seurat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Ie86501a4d283e3dab863bcda5e6cc63cd98d847c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-pathview: Disable vignettes....* gnu/packages/bioconductor.scm (r-pathview)[arguments]: Skip vignettes.
Change-Id: I8ab4558fba53a44db4d6e1dceee560ce6b3e67dd
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-cycombine: Add missing input....* gnu/packages/bioconductor.scm (r-cycombine)[native-inputs]: Add r-testthat.
Change-Id: I101d0109153f04dbf3b9a3d96c2b1c9a9f676f63
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-catalyst: Add missing input....* gnu/packages/bioconductor.scm (r-catalyst)[native-inputs]: Add r-diffcyt.
Change-Id: Ifa4bf1c432bb23e2b3570595c6bbe0b4279e27e9
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-adductomicsr: Disable tests....* gnu/packages/bioconductor.scm (r-adductomicsr)[arguments]: Disable tests.
Change-Id: Ibcacce27e8a62038bb5d24864125986889733e8c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-flowviz: Disable tests....* gnu/packages/bioconductor.scm (r-flowviz)[arguments]: Disable tests.
[properties]: Tell updater to ignore r-flowstats.
[native-inputs]: Add r-ncdfflow.
Change-Id: Ic6123c745dbfc25c026646e92a230a62db483306
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-derfinder: Add missing inputs....* gnu/packages/bioconductor.scm (r-derfinder)[native-inputs]: Add
r-derfinderdata and r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I2c0e5b6ea514c6b0024022e8e663d171dd8868da
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-derfinderdata....* gnu/packages/bioconductor.scm (r-derfinderdata): New variable.
Change-Id: I735030fad98b4eb20e0898d7f4779cd4c06ec82c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-psmatch: Add missing inputs....* gnu/packages/bioconductor.scm (r-psmatch)[native-inputs]: Add r-msdata,
r-mzid, r-mzr, and r-spectra.
Change-Id: Idda7d88adf8ce6bdd9ec29033b80b029f22b9c84
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-riboprofiling: Add missing input....* gnu/packages/bioconductor.scm (r-riboprofiling)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg19-knowngene
Change-Id: I448e1535c3ec6513ba6590e932c1e20ff1c34bb4
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-flowclust: Add missing input....* gnu/packages/bioconductor.scm (r-flowclust)[native-inputs]: Add
r-flowworkspace.
[properties]: Tell updater not to add r-opencyto.
[arguments]: Add phases 'delete-bad-tests.
Change-Id: Ie82854c0ff52c290e7482f67771aa9ef82a83343
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-flowworkspace: Disable tests....* gnu/packages/bioconductor.scm (r-flowworkspace)[arguments]: Disable tests.
Change-Id: Idb8abe5b056c3f67c44377782869b35620370aa9
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-ncdfflow: Delete bad tests....* gnu/packages/bioconductor.scm (r-ncdfflow)[arguments]: Add phase
'delete-bad-tests.
[properties]: Tell updater not to add r-flowstats.
Change-Id: I3ba5519d907890d606ea1160d4b715ce82392e36
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-gqtlbase: Disable tests....* gnu/packages/bioconductor.scm (r-gqtlbase)[arguments]: Disable tests; remove
trailing #T from 'fix-imports phase.
[native-inputs]: Add r-runit.
Change-Id: Ic05a67edccfb5eebe312811d461d65bc49929ec9
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-monocle3: Update to 1.3.7....* gnu/packages/bioconductor.scm (r-monocle3): Update to 1.3.7.
[propagated-inputs]: Remove r-htmlwidgets, r-matrix-utils, r-pryr,
r-rcppparallel, and r-reticulate; add r-biocparallel, r-delayedarray,
r-digest, r-future, r-ggrastr, r-hdf5array, r-lme4, r-openssl, r-plyr,
r-rcolorbrewer, r-rcppannoy, r-rcpphnsw, r-s4vectors, r-sf, and
r-summarizedexperiment.
[native-inputs]: Add r-testthat.
[description]: Expand.
[arguments]: Disable tests.
Change-Id: I0331c5148dce5b282d25edf93e0ccc80397f78ec
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-chromstar: Add missing input....* gnu/packages/bioconductor.scm (r-chromstar)[native-inputs]: Add r-testthat.
Change-Id: I29897bb94f587adf210395dd28b6e3dc480ac74c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-biocpkgtools: Disable tests....* gnu/packages/bioconductor.scm (r-biocpkgtools)[arguments]: Disable tests.
Change-Id: Id96ca07103e762fa267c83a178c4367855cdc5c8
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-damefinder: Add missing input....* gnu/packages/bioconductor.scm (r-damefinder)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
Change-Id: I9f3eeeb597d8c9672f201ab89f4e57118b8e6e72
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-stringdb: Add missing input and disable tests....* gnu/packages/bioconductor.scm (r-stringdb)[arguments]: Disable tests.
[native-inputs]: Add r-biocgenerics.
Change-Id: I534f7102e4397111bba7c58353ba5fc74c8bd2cf
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-category: Add missing inputs....* gnu/packages/bioconductor.scm (r-category)[arguments]: Add phase
'delete-bad-tests; skip building vignettes.
[native-inputs]: Add r-all, r-geneplotter, r-hgu95av2-db, r-karyoploter,
r-keggrest, r-lattice, r-limma, r-org-sc-sgd-db, and r-rcolorbrewer.
[properties]: Tell updater to ignore r-gostats.
Change-Id: I186b7a92437a20f85960bd605ae25ed5c29bf5b2
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-annotationhubdata: Delete bad tests....* gnu/packages/bioconductor.scm (r-annotationhubdata)[arguments]: Add phase
'delete-bad-tests.
Change-Id: Id14228ace239fca4524d92bd09a9298c556b9399
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-msexperiment: Add missing inputs....* gnu/packages/bioconductor.scm (r-msexperiment)[native-inputs]: Add
r-msbackendsql, r-msdata, r-mzr, and r-rsqlite.
[properties]: Tell updater to keep r-mzr.
Change-Id: I7fda0e9fd6b369506686970926f0ab53364a6503
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-msbackendsql....* gnu/packages/bioconductor.scm (r-msbackendsql): New variable.
Change-Id: Ie7937f5bcbe26cd53035e9944fe5befbb35efe27
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-tradeseq: Add missing inputs....* gnu/packages/bioconductor.scm (r-tradeseq)[native-inputs]: Add
r-delayedmatrixstats and r-dplyr.
Change-Id: I049a5cc83128d065a5524e6e1d8b93fa9ab6c8a8
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-monocle: Disable tests....* gnu/packages/bioconductor.scm (r-monocle)[arguments]: Disable tests and add
phase 'patch-tests.
Change-Id: I430617a0edf56b977f882e9bd2b79dcb4a34542d
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-gsva: Add missing input....* gnu/packages/bioconductor.scm (r-gsva)[native-inputs]: Add r-gsvadata.
Change-Id: I81da88cbbef78885863fe199a5a4e51d67e0c0bf
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-gsvadata....* gnu/packages/bioconductor.scm (r-gsvadata): New variable.
Change-Id: Ic3bbcf3cff9b0f98597f143041b1b79298215e56
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-hgu95a-db....* gnu/packages/bioconductor.scm (r-hgu95a-db): New variable.
Change-Id: I9eb2e8182689a2e1ba38c180d476dd60363f3c51
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-curatedtcgadata: Add missing input....* gnu/packages/bioconductor.scm (r-curatedtcgadata)[native-inputs]: Add
r-testthat.
Change-Id: I9379295f854ab66a88321326c25f8d7a15fe2e26
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-celldex: Disable tests....* gnu/packages/bioconductor.scm (r-celldex)[arguments]: Disable tests.
Change-Id: I1881b1793f2fe8bc870697976a5c3434147760ca
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-ihw: Add missing inputs....* gnu/packages/bioconductor.scm (r-ihw)[native-inputs]: Add r-ggplot2 and
r-scales.
Change-Id: Ib52a30442b00ae4303d307a816578012563aa612
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-enmix: Add missing inputs....* gnu/packages/bioconductor.scm (r-enmix)[native-inputs]: Add r-minfidata.
Change-Id: I0afa8a677c1b91ffec7463b2ed11aadd01a16797
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-minfi: Disable tests....* gnu/packages/bioconductor.scm (r-minfi)[arguments]: Disable tests.
Change-Id: I6fdb8d78c176c2ebbfbd9289a00833b79448c7a2
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-chippeakanno: Add missing inputs....* gnu/packages/bioconductor.scm (r-chippeakanno)[native-inputs]: Add
r-biomart, r-bsgenome-celegans-ucsc-ce10, r-bsgenome-drerio-ucsc-danrer7,
r-bsgenome-hsapiens-ucsc-hg19, r-ensdb-hsapiens-v79, r-org-ce-eg-db,
r-org-hs-eg-db, r-reactome-db, and r-txdb-hsapiens-ucsc-hg38-knowngene.
Change-Id: Ifd3e71dcca3297c03c9cc93da6c677a274c58b2c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-annotatr: Disable tests....* gnu/packages/bioconductor.scm (r-annotatr)[arguments]: Disable tests.
Change-Id: I819fe4bc651c39315ba6d42e34d36b505979003d
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-lpsymphony: Add missing input....* gnu/packages/bioconductor.scm (r-lpsymphony)[native-inputs]: Add gfortran.
Change-Id: Id5bcbdb1bf19364fc8cbee905efb18698893f771
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-multiassayexperiment: Add missing inputs....* gnu/packages/bioconductor.scm (r-multiassayexperiment)[native-inputs]: Add
r-hdf5array, r-raggedexperiment, and r-reshape2.
[arguments]: Add phase 'set-HOME.
Change-Id: Ifafc630ebd32cc255a4d7fd1c190a885e2f7020f
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-trajectoryutils: Add missing inputs....* gnu/packages/bioconductor.scm (r-trajectoryutils)[native-inputs]: Add
r-biocneighbors and r-delayedmatrixstats.
Change-Id: Id49b6e481ebae657f40aba4692dda4de4e2d5bd1
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-bigmemoryextras: Add missing input....* gnu/packages/bioconductor.scm (r-bigmemoryextras)[native-inputs]: Add
r-testthat.
Change-Id: Iafc29855c30e74c055f157303e3c2f351f0e7aeb
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-leidenbase: Add missing inputs....* gnu/packages/bioconductor.scm (r-leidenbase)[native-inputs]: Add r-knitr and
r-testthat.
Change-Id: I35e5aebbe6a5e44dea1743f011e4a3a362f6efb1
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-illuminaio: Add missing inputs....* gnu/packages/bioconductor.scm (r-illuminaio)[native-inputs]: Add r-biocstyle
and r-illuminadatatestfiles.
Change-Id: I2a0cea6faf2f67e2b851944e442a2a541328349a
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-illuminadatatestfiles....* gnu/packages/bioconductor.scm (r-illuminadatatestfiles): New variable.
Change-Id: I6d1d3f342c8f6587557b18d5071d19e1e4e6aa28
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-gypsum: Disable tests....* gnu/packages/bioconductor.scm (r-gypsum)[arguments]: Disable tests.
Change-Id: Ibec4e3986a6257b20e6a01a8286f1d6ce682171e
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-trnadbimport: Add missing input....* gnu/packages/bioconductor.scm (r-trnadbimport)[native-inputs]: Add
r-httptest.
Change-Id: Ib654aa76d9a960c3d6cbc50264536af400bfd3e5
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-anvil: Add missing input....* gnu/packages/bioconductor.scm (r-anvil)[native-inputs]: Add r-testthat.
Change-Id: Id8cc0f631a7923204d0778d3e2da1b15c7d4fc68
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-biobroom: Add missing inputs....* gnu/packages/bioconductor.scm (r-biobroom)[native-inputs]: Add r-deseq2 and
r-edger.
Change-Id: I231026845896b2162d34724ba405a2f5bbacc56e
| Ricardo Wurmus |
