aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
AgeCommit message (Collapse)Author
2024-01-11gnu: r-cytolib: Unbundle boost.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of boost. [arguments]: Change build system to link with existing boost library. [inputs]: Add boost, openblas, protobuf, and zlib. Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d
2024-01-11gnu: r-singler: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.1. Change-Id: I9b914f8194cf3317a3102c03a2cb1970f0583d9e
2024-01-11gnu: r-biocneighbors: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.2. Change-Id: I1b2ee238581afe644ea3916b0bdcc360dae63f9f
2024-01-11gnu: r-inspect: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.32.1. [propagated-inputs]: Remove r-gdata; add r-readxl. Change-Id: I80ebb3d77076cd5b0cb04d83140098251d608afd
2024-01-11gnu: r-genomicalignments: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.1. Change-Id: I5309ec8dd3b464ba54bc94a7d0a5115cc38ecf40
2024-01-11gnu: r-edger: Update to 4.0.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.6. Change-Id: Ic2163a951bdfcaf7c54144008ae698b32d5e59a2
2024-01-10gnu: Add r-jaspar2020.nafkhamdc
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10gnu: Add r-dsb.nafkhamdc
* gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10gnu: Add r-escape.nafkhamdc
* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-05gnu: r-edger: Update to 4.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5. Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9
2024-01-05gnu: Add r-scrnaseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scrnaseq): New variable. Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c
2024-01-02gnu: Add r-toast.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-toast): New variable. Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6
2024-01-02gnu: Add r-epidish.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-epidish): New variable. Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4
2024-01-02gnu: Add r-scgate.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-scgate): New variable. Change-Id: I441bbea5a68882f5f619dea72abdf84619c9d02f
2024-01-01gnu: r-batchelor: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1. Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
2024-01-01gnu: r-genomeinfodb: Update to 1.38.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5. Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
2024-01-01gnu: r-sparsearray: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3. Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
2024-01-01gnu: r-genomicscores: Update to 2.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3. Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
2024-01-01gnu: r-metapod: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1. Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
2024-01-01gnu: r-biocneighbors: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1. Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
2024-01-01gnu: r-genomeinfodb: Update to 1.38.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4. Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
2023-12-15gnu: r-tximeta: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1. Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78
2023-12-15gnu: r-biomvrcns: Update to 1.42.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2. Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4
2023-12-15gnu: r-basilisk: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1. Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45
2023-12-15gnu: r-basilisk-utils: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.1. Change-Id: Icda5e71c0a709e2de4c6303774c37224a9476d62
2023-12-15gnu: r-gviz: Update to 1.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.1. Change-Id: I10e68ee45be2cd2cddc217e75ee6667323c4dd57
2023-12-15gnu: r-mscoreutils: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.1. Change-Id: Ia978e23f1f0bf5a58ffa2c76a65c5f9982629aac
2023-12-15gnu: r-sparsearray: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.2. Change-Id: I96f367bf5c39c973e1c5fad3b9620bfcaf88417a
2023-12-15gnu: r-scater: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scater): Update to 1.30.1. Change-Id: I5e497b654bc4a26adc6d956f728f31ae631a239c
2023-12-15gnu: r-s4vectors: Update to 0.40.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.2. Change-Id: I6201d17fa2a6be618feb26ad632b9249f87d86c5
2023-12-15gnu: r-ucell: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.2. Change-Id: Ie08960a237ad1515332794b23c2bd31e94299dfe
2023-12-15gnu: r-variancepartition: Update to 1.32.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.2. [propagated-inputs]: Add r-matrixstats. Change-Id: I436a1db36ad910aec0fac87150c62735f6509575
2023-12-15gnu: r-flowworkspace: Update to 4.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.1. Change-Id: I2e950e77842add2eebeeffac2492ba0ef1aa6422
2023-12-15gnu: r-xcms: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.1. Change-Id: I98dd730bb959d2483164177a3e534915d13fee44
2023-12-15gnu: r-genomicscores: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.2. Change-Id: I00417ef0c2f9657ec39690baa52a1cd075fb69c6
2023-12-15gnu: r-dose: Update to 3.28.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.2. [propagated-inputs]: Remove r-hpo-db and r-mpo-db; add r-yulab-utils. Change-Id: Ia29d318cac9b1e261fb89fc4d15f8b40ec3583f3
2023-12-15gnu: r-lefser: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.12.1. Change-Id: Iac94395b267e925116929d48abb3c28cff31504e
2023-12-15gnu: r-zellkonverter: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.1. Change-Id: I0db7450b3eff32e739ea3b806dde96114caba440
2023-12-15gnu: r-variantannotation: Update to 1.48.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.1. Change-Id: I51e6a6db61fc4782823f9a7f85345742b8c7ab72
2023-12-15gnu: r-trackviewer: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.1. Change-Id: I3ec74e7c37830e7a0b3b12311e304cc2e4fe322e
2023-12-15gnu: r-tcgautils: Update to 1.22.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.2. Change-Id: I9c33a55076c672fa3a6ff6c97675dee16d186a39
2023-12-15gnu: r-rhdf5filters: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.1. Change-Id: I260973b51c3a8e895339d1c4b6fbed8f66ccb50c
2023-12-15gnu: r-rhdf5: Update to 2.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.1. Change-Id: Ia4781476ab82dd867a707e98767d8ee12d208003
2023-12-15gnu: r-msnbase: Update to 2.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.1. Change-Id: I25fdd2662ab60939732cdee51fc2b53916f1d705
2023-12-15gnu: r-genomeinfodb: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.2. Change-Id: I17852db375cc7e833d100998c89751e68f3d4362
2023-12-15gnu: r-edger: Update to 4.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.3. Change-Id: I97d73da131092effbf2404e710389d863ba39889
2023-12-15gnu: r-champ: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-champ): Update to 2.32.0. Change-Id: I2058a0c0b086452ccfae5ef84884aa0b9cf51abb
2023-12-15gnu: r-annotationdbi: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.1. Change-Id: If7f6bef70b3f4cc59c81ea68632b36c4b8449a73
2023-12-15gnu: r-infercnv: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.1. Change-Id: I99b0f17246ef267a58f87c1719066b1b4f198d8b
2023-12-15gnu: r-dmrcate: Update to 2.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.16.1. [propagated-inputs]: Remove r-dss. Change-Id: I183971826201b19cc88eb2768716aa2e165aba1f
generated by cgit