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2018-07-29gnu: python-dendropy: Update to 4.4.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): Update to 4.4.0. [source]: Use GitHub URI. Remove patch. [properties]: Remove field. (python2-dendropy)[arguments]: Run tests with setup.py. [native-inputs]: Remove 'python2-nose. * gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Delete it.
2018-07-28gnu: x265: Fix compilation on ARMv7.Ludovic Courtès
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file. * gnu/packages/video.scm (x265)[sources](patches): Add it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-28gnu: mariadb: Work around GCC ICE on armhf-linux.Ludovic Courtès
* gnu/packages/patches/mariadb-gcc-ice.patch: New file. * gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add 'apply-patch' phase. [native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-25Merge remote-tracking branch 'origin/master' into qt-updatesEfraim Flashner
2018-07-25Revert "gnu: quassel: Fix building with Qt 5.11."Efraim Flashner
This reverts commit 68ddfb2e8d43de248a64a9baf34ff7002053ede6. This is no longer necessary after the update to Qt-5.11.1.
2018-07-24gnu: syncthing: Update to 0.14.49.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.49. [source]: Remove obsolete patch. [inputs]: Remove go-github-com-kardianos-osext. * gnu/packages/patches/syncthing-fix-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-07-24Revert "gnu: sddm: Fix CMake build."Efraim Flashner
This reverts commit 8674abb1dda0278f81b5965985e6b78497aab386. This is no longer necessary after the upgrade to Qt-5.11.1.
2018-07-24gnu: xorg-server: Apply patch to fix screen rotation on KMS.Ludovic Courtès
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=106715>. * gnu/packages/patches/xorg-server-rotate-fb.patch: New file. * gnu/packages/xorg.scm (xorg-server)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-22gnu: python-pyqt: Don't use private sip file.Efraim Flashner
* gnu/packages/qt.scm (python-sip)[arguments]: Don't use '--sip-module' flag in custom 'configure phase. (python-pyqt)[sources]: Add patch. * gnu/packages/patches/pyqt-public-sip.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-07-22gnu: sddm: Update to 0.18.0.Stefan Stefanović
* gnu/packages/display-managers.scm (sddm): Update to 0.18.0. * gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-21gnu: openbabel: Fix crash when opening NWChem output files.Kei Kebreau
* gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/chemistry.scm (openbabel)[source]: Use it.
2018-07-17gnu: ghostscript: Fix CVE-2018-10194.Leo Famulari
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field. (ghostscript/fixed): New variable. * gnu/packages/patches/ghostscript-CVE-2018-10194.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-18gnu: Add stb-image.Marius Bakke
* gnu/packages/stb.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2018-07-17gnu: twinkle: Add missing headersJovany Leandro G.C
* gnu/packages/patches/twinkle-include-qregexpvalidator-explicity.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/telephony.scm (twinkle)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-07-16gnu: python-cairocffi: Fix loading of shared libraries.Danny Milosavljevic
Fixes <https://bugs.gnu.org/32170>. * gnu/packages/patches/python-cairocffi-dlopen-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-cairocffi)[inputs]: Add glib, gtk+, pango. [native-inputs]: Add python-pytest. [arguments]: Enable tests. [arguments]<#:phases>[patch-paths]: New phase.
2018-07-16gnu: Remove leftover patch.Leo Famulari
* gnu/packages/patches/file-CVE-2017-1000249.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.patch'.
2018-07-16gnu: monero: Update to 0.12.3.0.Theodoros Foradis
* gnu/packages/patches/monero-use-system-miniupnpc.patch: New file. * gnu/local.mk: Add it. * gnu/packages/finance.scm (monero): Update to 0.12.3.0. [source]: Add patch. Remove snippet because miniupnpc, rapidjson and unbound are no longer bundled in-tree. [inputs]: Add zeromq, cppzmq, libsodium. Use monero-miniupnpc. [arguments]: Change build-type to "release". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-07-16gnu: fltk: Update to 1.3.4-2.Efraim Flashner
* gnu/packages/fltk.scm (fltk): Update to 1.3.4-2. [source]: Remove patches. [inputs]: Switch from libjpeg-8 to libjpeg. * gnu/packages/patches/fltk-shared-lib-defines.patch, gnu/packages/patches/fltk-xfont-on-demand.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
2018-07-13gnu: bind: Update to 9.12.2.Julien Lepiller
* gnu/packages/dns.scm (bind): Update to 9.12.2. * gnu/packages/patches/bind-CVE-2018-5738.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-07-13Merge branch 'staging'Marius Bakke
2018-07-13gnu: xapian: Fix notmuch test failure.Marius Bakke
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/search.scm (xapian)[source](patches): Use it.
2018-07-12gnu: Syncthing: Fix a crash bug.Leo Famulari
* gnu/packages/patches/syncthing-fix-crash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/syncthing.scm (syncthing)[source]: Use it.
2018-07-11build: Add missing patches to the distribution.Ludovic Courtès
Reported by jonsger. * gnu/local.mk (dist_patch_DATA): Add perl-text-markdown-discount-unbundle.patch and racket-fix-xform-issue.patch.
2018-07-10gnu: Add patches.Danny Milosavljevic
* gnu/local.mk (dist_patch_DATA): Add 'rust-bootstrap-stage0-test.patch', 'rust-coresimd-doctest.patch'.
2018-07-09gnu: openscenegraph: Update to 3.6.2.Alex Kost
* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.2. [source]: Use the new url and 'git-fetch' method. [properties]: Add 'upstream-name'. [native-inputs]: Add 'pkg-config'. [inputs]: Add 'libxrandr'. * gnu/packages/patches/openscenegraph-ffmpeg3.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-07-09services: Add prometheus-node-exporter-service-type.Gábor Boskovits
* gnu/services/monitoring.scm (prometheus-node-exporter-service-type): New variable. (<prometheus-node-exporter-configuration>): New record type. (prometheus-node-exporter-shepherd-service): New procedure. * gnu/doc/guix.texi (Monitoring Services): Document it. * gnu/tests/monitoring.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add test module.
2018-07-08Merge branch 'master' into stagingMarius Bakke
2018-07-08gnu: xf86-video-savage: Fix FTBFS with xorg-server >= 1.20.Marius Bakke
* gnu/packages/patches/xf86-video-savage-xorg-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xorg.scm (xf86-video-savage)[source](patches): Use it.
2018-07-08gnu: xf86-video-sis: Fix FTBFS with xorg-server >= 1.20.Marius Bakke
* gnu/packages/patches/xf86-video-sis-xorg-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xorg.scm (xf86-video-sis)[source](patches): Use it.
2018-07-02gnu: libgit2: Update to 0.26.4 [fixes CVE-2018-11235].Leo Famulari
* gnu/packages/version-control.scm (libgit2): Update to 0.26.4. (source): Adjust patch name. * gnu/packages/patches/libgit2-0.25.1-mtime-0.patch: Rename to ... * gnu/packages/patches/libgit2-mtime-0.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-07-03gnu: icedtea: Work around gcc segfault.Gábor Boskovits
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Add patch to hotspot. * gnu/packages/patches/icedtea-7-hotspot-gcc-segfault-workaround.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-02gnu: zstd: Update to 1.3.5.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (zstd): Update to 1.3.5. [source]: Add two patches to make the test suite pass. * gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch, gnu/packages/patches/zstd-fix-stdin-list-test.patch: New files. * gnu/local.mk (dist_patch_DATA): Add both.
2018-07-02gnu: icedtea: Work around gcc segfault.Gábor Boskovits
* gnu/packages/java.scm (icedtea-6)[arguments]: Modify phases to extract hostspot, as after the patching it becomes an archive. [native-inputs]: add patch to hotspot-src. * gnu/packages/patches/icedtea-6-hotspot-gcc-segfault-workaround.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-02Merge branch 'master' into stagingMarius Bakke
2018-07-01gnu: emacs-browse-at-remote: Update to 0.10.0.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-browse-at-remote): Update to 0.10.0. * gnu/packages/patches/emacs-browse-at-remote-cgit-gnu.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-30gnu: qtoctave: Fix build for Qt 5.11.Kei Kebreau
* gnu/packages/maths.scm (qtoctave)[source]: Add patch. [native-inputs]: Add texlive. * gnu/packages/patches/qtoctave-qt-5.11-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-27gnu: icecat: Add more fixes from upstream mozilla-esr52.Mark H Weaver
Includes fixes for CVE-2018-12363, CVE-2018-12364, CVE-2018-12366, the remaining 1 out of 2 changesets for CVE-2018-5156, and the remaining 7 out of 17 changesets for CVE-2018-5188. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. * gnu/packages/patches/icecat-bug-1413868-pt1.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-26gnu: Add beignet.Fis Trivial
* gnu/packages/opencl.scm (beignet): New variable. * gnu/packages/patches/beignet-correct-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-26gnu: libtiff: Fix CVE-2018-{8905,10963}.Leo Famulari
* gnu/packages/patches/libtiff-CVE-2018-8905.patch, gnu/packages/patches/libtiff-CVE-2018-10963.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff)[replacement]: New field. (libtiff/fixed): New variable.
2018-06-26gnu: Add gcc@8.Marius Bakke
* gnu/packages/patches/gcc-8-strmov-store-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gcc.scm (gcc-8): New public variable.
2018-06-26Revert "gnu: gnu: Make alsa find its plugins by setting ALSA_PLUGIN_DIR."宋文武
This reverts commit 2101cc3fb691f443b830fdf5f846ded5fa018739. With commit 1e3861eb, we can do it without ALSA_PLUGIN_DIR. See <https://bugs.gnu.org/31934> for details.
2018-06-26Merge branch 'master' into stagingMarius Bakke
2018-06-26gnu: jamvm@1.5.1: Fix building on armhf-linux.Efraim Flashner
* gnu/packages/java.scm (jamvm@1.5.1)[source]: Add patch. * gnu/packages/patches/jamvm-arm.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-06-26gnu: java-commons-collections: Fix java8 errors.Gábor Boskovits
* gnu/packages/java.scm (java-commons-collections)[source]: Add patch. * gnu/packages/patches/java-commons-collections-fix-java8.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-26gnu: dovecot-trees: Fix build with dovecot 2.3.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dovecot-trees)[source]: Add patch. * gnu/packages/patches/dovecot-trees-support-dovecot-2.3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-25gnu: Add opencl-headers.Fis Trivial
* gnu/packages/opencl.scm: New file. (make-opencl-headers): New function. (opencl-headers-2.2, opencl-headers-2.1, opencl-headers-2.0, opencl-headers-1.2, opencl-headers-1.1, opencl-headers-1.0, opencl-headers): New variables. * gnu/local.mk: Add the new file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-23services: Add fingerprint identification service.Danny Milosavljevic
* gnu/services/authentication.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Miscellaneous Services): Document it.
2018-06-22gnu: nyx: Show header stats.Tobias Geerinckx-Rice
This is a follow-up to commit 18ab54d4a2aaf932b14e69c30650c1d2c4db33c7 and fixes a regression introduced by Nyx 2.0.4 + Python 3. * gnu/packages/tor.scm (nyx)[source]: Add patch. * gnu/packages/patches/nyx-show-header-stats-with-python3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-21Merge branch 'master' into stagingMarius Bakke
2018-06-20gnu: ocaml: Build reproducibly.Julien Lepiller
* gnu/packages/patches/ocaml-enable-ocamldoc-reproducibility.patch: New file. * gnu/packages/ocaml.scm (ocaml)[origin]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
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