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2022-05-12gnu: Add python-debugpy....* gnu/packages/python-xyz.scm (python-debugpy): New variable. * gnu/packages/patches/python-debugpy-unbundle-pydevd.patch: New file. * gnu/local.mk: Register it. Maxim Cournoyer
2022-05-12gnu: python-mypy: Update to 0.942 and fix search path....* gnu/packages/patches/python-mypy-use-sys-path.patch: New patch. * gnu/local.mk: Register it. * gnu/packages/python-check.scm (python-mypy): Update to 0.942. [source]: Apply patch. Maxim Cournoyer
2022-05-12gnu: racket: Update to 8.5....* gnu/packages/patches/racket-gui-tethered-launcher-backport.patch, gnu/packages/patches/racket-enable-scheme-backport.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/chez.scm (chez-scheme-for-racket): Update to 9.5.7.6. * gnu/packages/racket.scm (%racket-version): Update to 8.5. (%racket-origin)[patches]: Remove obsolete patches. (racket-vm-common-configure-flags): Correct comment. (racket)[inputs]<2d, datalog, deinprogramm, draw, drracket, expeditor, htdp, pict, plot, quickscript, racklog, rackunit, redex, scribble, typed-racket, string-constants, syntax-color, web-server, xrepl>: Update checksums. <gui, srfi>: Likewise, and remove obsolete backports. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2022-05-08gnu: isc-dhcp: Update to 4.4.3....* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.3. [source]: Remove upstreamed patch. * gnu/packages/patches/isc-dhcp-gcc-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2022-05-09gnu: valgrind: Allow ld.so symbols to be found....Fixes <https://issues.guix.gnu.org/54728>. * gnu/packages/valgrind.scm (valgrind/interactive)[native-inputs]: Add libc:debug [arguments]: Add patch-default-debuginfo-path phase [source]: Add patch. (valgrind-3.18)[source]: Inherit from (package-source valgrind/interactive) and remove 'patches' field. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Denis 'GNUtoo' Carikli
2022-05-09gnu: emacs-git-email: Fixes build of package....* gnu/packages/patches/emacs-git-email-missing-parens.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-git-email)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Niklas Eklund
2022-05-01gnu: tor: Update to 0.4.7.7....* gnu/packages/tor.scm (tor): Update to 0.4.7.7. [source]: Remove patch. * gnu/packages/patches/tor-sandbox-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2022-05-06gnu: Add dezyne....* gnu/packages/dezyne.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Jan (janneke) Nieuwenhuizen
2022-05-06gnu: nftables: Update to 1.0.2....* gnu/packages/patches/nftables-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (nftables): Update to 1.0.2. [source]: Add patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> kiasoc5
2022-05-06gnu: ytfzf: Update to 2.3....* gnu/packages/patches/ytfzf-programs.patch, * gnu/packages/patches/ytfzf-updates.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): Unregister them. * gnu/packages/image-viewers.scm (ytfzf): Update to 2.3. [source]: Delete patches. [arguments]: Remove phase 'patch-script. Add phase 'install-addons, 'wrap-program. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2022-05-03gnu: dealii: Update to 9.3.3....* gnu/packages/maths.scm (dealii): Update to 9.3.3. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: Delete file. * gnu/packages/patches/dealii-fix-sundials.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-04-29gnu: openssh: Trust Guix store directory...* gnu/local.mk (dist_patch_DATA): Add the patch * gnu/packages/patches/openssh-trust-guix-store-directory.patch: Patch it * gnu/packages/ssh.scm (openssh[source]): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexey Abramov
2022-04-28gnu: flatpak: Do not leak GDK_PIXBUF_MODULE_FILE into the sandbox....Fixes <https://issues.guix.gnu.org/54784>. * gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: New file. * gnu/local.mk (dist_patch_DATA): Add corresponding entry. * gnu/packages/package-management.scm (flatpak)[source]: Use patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zhu Zihao
2022-04-20gnu: Add pikchr....* gnu/packages/pikchr.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> pukkamustard
2022-04-20gnu: idris: Update to 1.3.4....* gnu/packages/patches/idris-build-with-haskeline-0.8.patch, gnu/packages/patches/idris-build-with-megaparsec-9.patch, gnu/packages/patches/idris-disable-test.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): Unregister them. * gnu/packages/idris.scm (idris): Update to 1.3.4. [source]: Use git-fetch. Adjust patches. Co-authored-by: Attila Lendvai <attila@lendvai.name> Eric Bavier
2022-04-18gnu: openjdk15: Make big cursors work....* gnu/packages/patches/openjdk-15-xcursor-no-dynamic.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (openjdk15)[source]: Add it. Danny Milosavljevic
2022-04-13gnu: idris: Fixes test failure....* gnu/packages/patches/idris-test-ffi008.patch: New file. * gnu/packages/idris.scm (source): Use it. * gnu/local.mk (dist_patch_DATA): Register it. Eric Bavier
2022-04-12gnu: webkitgtk: Update to 2.36.0 and enable extra features....* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.0. [source]: Remove the webkitgtk-bind-all-fonts.patch and webkitgtk-canonicalize-paths.patch patches. [arguments]: Use gexp. [tests?]: Update comment. [build-type]: Add explanatory comment. [configure-flags]: Enable gamepad support, remove nonexistent USE_SYSTEMD option and enable mini-browser. [phases]{do-not-disable-new-dtags}: New phase. {help-cmake-find-elogind}: Likewise. {patch-gtk-doc-scan}: Simplify to avoid for-each. Locate docbookx.dtd via search-input-file. {embed-absolute-wpebackend-reference}: Use search-input-file. [native-inputs]: Use new style. [inputs]: Likewise. Add elogind and libmanette. [description]: Adjust indentation. (webkitgtk-with-libsoup2): Re-format comment, fixing spacing. [configure-flags]: Use gexp. [propagated-inputs]: Use modify-inputs to replace libsoup with libsoup-minimal-2. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Delete file. * gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise. * gnu/local.mk: De-register them. Maxim Cournoyer
2022-04-11gnu: hwloc@1: Update to 1.11.13....* gnu/packages/patches/hwloc-1-test-btrfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mpi.scm (hwloc-1): Use it and update to 1.11.13. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Philippe SWARTVAGHER
2022-04-10gnu: efivar: Fix build errors on i686-linux....* gnu/packages/patches/efivar-211.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (efivar)[source]<origin>: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> itd
2022-04-09gnu: ganeti: Update to 3.0.2....* gnu/packages/patches/ganeti-haskell-compat.patch, gnu/packages/patches/ganeti-sphinx-compat.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (ganeti): Update to 3.0.2. [source](patches): Remove obsolete. [arguments]: Remove obsolete phases. Disable one more test. Marius Bakke
2022-04-09gnu: ganeti: Fix test failure with PyYAML 6.0....This fixes a regression that was introduced in 27720d0fe14ee4cd413a6745e0782a698a011924. * gnu/packages/patches/ganeti-pyyaml-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (ganeti)[source](patches): Add it. Marius Bakke
2022-04-07gnu: LLVM, Clang: Add 14.0.0....* gnu/packages/llvm.scm (%llvm-monorepo-hashes, %llvm-patches, llvm-monorepo): New variables. (clang-runtime-from-llvm): Make HASH optional; use monorepo when not present. (clang-from-llvm): Likewise. (llvm-14, clang-runtime-14, clang-14, clang-toolchain-14, lld-14): New variables. (llvm-13): Inherit from LLVM-14. (lld-13): Inherit from LLD-14. (lld): Turn into alias for LLD-14. * gnu/packages/patches/clang-14.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/zig.scm (zig): Change from LLD to LLD-13. Marius Bakke
2022-04-05gnu: u-boot: Update to 2022.04....* gnu/packages/bootloaders.scm (u-boot): Update to 2022.01. [native-inputs]: Add gnutls, tinfo, libuuid. (u-boot-qemu-riscv64-smode): Drop custom patches. * gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Refresh patch. * gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Remove patch, applied upstream. * gnu/local.mk (dist_patch_DATA): Update with removed patches. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Vagrant Cascadian
2022-04-05gnu: python-w3lib: Fix build....* gnu/packages/python-web.scm (python-w3lib): Fix build. [source]: Add python-w3lib-fix-test-failure.patch. [arguments]: Use pytest in the 'check phase. [native-inputs]: Add python-pytest. * gnu/packages/patches/python-w3lib-fix-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2022-04-05gnu: pigx-scrnaseq: Update to 1.1.8....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8. [patches]: Remove. [native-inputs]: Remove. * gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-04-04gnu: gtk: Update to 4.6.1....* gnu/local.mk (dist_patch_DATA): Remove gtk-introspection-test.patch. * gnu/packages/patches/gtk-introspection-test.patch: Remove. * gnu/packages/gtk.scm (gtk): Update to 4.6.1. [source]: Remove stale patch. [arguments]<phases>: Add 'patch-rst2man' phase, correct the binary name of rst2man to 'rst2man.py' [inputs]: Add libjpeg-turbo, libpng, libtiff. [native-inputs]: Add python-docutils. [propagated-inputs]: Use pango-next. * gnu/packages/fcitx5.scm (fcitx5-gtk)[arguments]: Disable GTK4 build. <configure-flags>: Add "-DENABLE_GTK_IM_MODULE=OFF". <phases>: In phase "patch-install-prefix", Remove GTK4 code. [inputs]: Remove package gtk. [outputs]: Remove output "gtk4". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zhu Zihao
2022-04-03gnu: xterm: Make big cursors work....* gnu/packages/patches/xterm-370-explicit-xcursor.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (xterm)[source]: Add it. [arguments]<#:configure-flags>: Add "-lXcursor". Danny Milosavljevic
2022-04-03gnu: Add rust-ndarray-0.14....* gnu/packages/crates-io.scm (rust-ndarray-0.14): New variable. * gnu/packages/patches/rust-ndarray-0.14-remove-blas-src.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-03-29gnu: pigx-sars-cov2-ww: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5. [source]: Remove patch. [arguments]: Disable tests. * gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-03-29gnu: pigx-rnaseq: Update to 0.0.20....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20. [source]: Remove patch. [inputs]: Add megadepth. * gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-03-28gnu: zig: Remove unneeded patch....* gnu/packages/zig.scm (zig)[source]: Remove one patch. * gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-03-24gnu: tremc: Update to 0.9.3....* gnu/packages/bittorrent.scm (tremc): Update to 0.9.3. [source]: Remove obsolete patch. * gnu/packages/patches/tremc-fix-decodestring.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2022-03-24gnu: python-robotframework: Update to 5.0 and run acceptance tests....* gnu/packages/python-xyz.scm (python-robotframework): Update to 5.0. [patches]: Remove python-robotframework-ug2html.patch. Add python-robotframework-atest.patch and update python-robotframework-source-date-epoch.patch. [phases]: Use gexps. {delete-problematic-tests}: New phase. {check}: Also run `atest', the acceptance test suite. [native-inputs]: Use new style. Add python-lxml, python-pyyaml, python-xmlschema, scrot and xvfb-run. * gnu/packages/patches/python-robotframework-atest.patch: New file. * gnu/packages/patches/python-robotframework-source-date-epoch.patch: Update patch. * gnu/packages/patches/python-robotframework-ug2html.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Maxim Cournoyer
2022-03-24gnu: avr-xyz: Add simavr...* gnu/packages/avr-xyz.scm: New module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add 'avr-xyz.scm'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Artyom V. Poptsov
2022-03-21gnu: openboardview: Unbundle imgui....* gnu/packages/patches/openboardview-use-system-imgui.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/electronics.scm (openboardview)[source]: Delete "imgui" subdirectory from snippet and apply patch. [inputs]{imgui}: New input. Maxim Cournoyer
2022-03-19gnu: python-mypy: Fix test errors on i686-linux....* gnu/packages/patches/python-mypy-12332.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-check.scm (python-mypy)[source]<origin>: Use patch "python-mypy-12332.patch" to avoid overflow issues resulting in test failures. Signed-off-by: Ludovic Courtès <ludo@gnu.org> itd
2022-03-19gnu: Add wego....* gnu/packages/weather.scm: New file. * gnu/local.mk: Register new file. Nicolas Goaziou
2022-03-16gnu: dunst: Update to 1.8.1....* gnu/packages/dunst.scm (dunst): Update to 1.8.1. * gnu/packages/patches/dunst-1.7.3-fix-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jai Vetrivelan
2022-03-15gnu: mariadb: Fix building for powerpc-linux....* gnu/packages/databases.scm (mariadb)[arguments]: Add custom phase for powerpc-linux to apply patch. [native-inputs]: When building for powerpc-linux add patch and a patch file. * gnu/packages/patches/mariadb-link-libatomic.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-03-11gnu: transfig: Fix "multiple definition" errors with GCC 10+....* gnu/packages/patches/transfig-gcc10-fno-common.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xfig.scm (transfig)[source]<origin>: Use patch "transfig-gcc10-fno-common.patch" to avoid "multiple definition" errors with GCC 10+ and "-f-no-common". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ivan Vilata i Balaguer
2022-03-09gnu: python-robotframework: Fully build the documentation....* gnu/packages/patches/python-robotframework-ug2html.patch: New patch. * gnu/local.mk: Register it. * gnu/packages/python-xyz.scm (python-robotframework): Apply patch. [modules]: New argument. [phases]{build-and-install-doc}: Modify to build the full HTML documentation, including the user guide. [native-inputs]: Add python-pygments. Maxim Cournoyer
2022-03-09gnu: python-robotframework-sshlibrary: Patch for RobotFramework 5 compatibility....* gnu/packages/patches/python-robotframework-sshlibrary-rf5-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/python-xyz.scm (python-robotframework-sshlibrary): Apply it. Maxim Cournoyer
2022-03-04gnu: racket: Update to 8.4....* gnu/packages/patches/racket-enable-scheme-backport.patch, gnu/packages/patches/racket-gui-tethered-launcher-backport.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/racket.scm (%racket-version, %racket-commit) (%racket-origin): New variables. [patches]: Add "racket-enable-scheme-backport.patch". (racket-minimal): Update to 8.4. [version]: Use '%racket-version'. [source]: Use '%racket-origin'. [inputs]: Add 'ncurses'. Remove 'zlib:static' and 'lz4:static'. (racket-minimal-bc-3m)[inputs]: Adjust accordingly. (racket-bootstrap-chez-bootfiles)[version]: Use Chez Scheme's '(scheme-fork-version-number)'. (racket)[version]: Use '%racket-version'. [native-inputs]: Use '%racket-origin'. [source]: Update to 8.4. <patches>: Use "racket-gui-tethered-launcher-backport.patch". <snippet>: Remove "srfi-doc-nonfree". Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Philip McGrath
2022-03-03gnu: Add barrier....* gnu/packages/barrier.scm: New file. * gnu/local.mk: Add it. Mathieu Othacehe
2022-03-02gnu: rust-pinot-0.1: Update to 0.1.4....* gnu/packages/crates-io.scm (rust-pinot-0.1): Update to 0.1.4. * gnu/packages/patches/rust-pinot-0.1-implement-math-table.patch: Remove file. * gnu/local.mk: Remove reference to the file above. Nicolas Goaziou
2022-02-27gnu: Fix typo....* gnu/local.mk (dist_patch_DATA): Fix typo. This follows up on commit 6693ff05696d71a9ca556760a1597b48a95c5298. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Brendan Tildesley
2022-03-01gnu: tectonic: Update to 0.8.1....* gnu/packages/rust-apps.scm (tectonic): Update to 0.8.1. [inputs]: Add FREETYPE, GRAPHITE2, ICU4C, LIBPNG. * gnu/packages/crates-io.scm (rust-pinot-0.1)[origin]<patches>: Add patch necessary for Tectonic. (rust-tectonic-docmodel-0.1): Update to 0.1.2. (rust-tectonic-engine-spx2html-0.1): New variable. (rust-tectonic-engine-xetex-0.2): New variable. (rust-tectonic-engine-xetex-0.1): Remove variable. (rust-tectonic-io-base-0.4): New variable. (rust-tectonic-io-base-0.3): Inherit from above. (rust-tectonic-xdv-0.2): New variable. (rust-tectonic-xdv-0.1): Remove variable. * gnu/packages/patches/rust-pinot-0.1-implement-math-table.patch: New file. * gnu/local.mk (dist_patch_DATA): Register new file. Nicolas Goaziou
2022-03-01gnu: guile-ssh: Update to 0.15.1....* gnu/packages/patches/guile-ssh-fix-test-suite.patch, gnu/packages/patches/guile-ssh-read-error.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (guile-ssh): Update to 0.15.1, and remove those patches. (guile2.2-ssh)[source]: Remove. (guile2.0-ssh): Remove. Co-authored-by: poptsov.artyom@gmail.com (Artyom V. Poptsov) Ludovic Courtès
2022-03-01gnu: guile@3.0.8: Get correct type sizes when cross-compiling....This works around <https://issues.guix.gnu.org/54198>, whereby cross-compilation from (say) x86_64-linux to i586-pc-gnu would produce a broken Guile that crashes at startup. * gnu/packages/patches/guile-cross-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-3.0-latest)[source]: Use it. Ludovic Courtès
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