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2017-01-01gnu: python-dendropy: Update to 4.2.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0. [source]: Remove patch. (python2-dendropy)[source]: Use the same source as python-dendropy. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-30gnu: libpng: Mention CVE-2016-10087.Leo Famulari
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ... * gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust. * gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
2016-12-30gnu: multiqc: Update to 0.9.Ben Woodcroft
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>. * gnu/packages/bioinformatics.scm (multiqc): Update to 0.9. [origin]: Add patch. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-12-29gnu: libpng: Fix a null pointer dereference [fixes security issue].Leo Famulari
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libpng)[replacement]: New field. (libpng/fixed): New variable.
2016-12-24gnu: libxml2: Fix CVE-2016-5131.Leo Famulari
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
2016-12-24gnu: libxml2: Fix CVE-2016-4658.Leo Famulari
* gnu/packages/xml.scm (libxml2)[replacement]: New field. (libxml2/fixed): New variable. * gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-12-22gnu: gnupg: Fix build on 32-bit architectures.Marius Bakke
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnupg.scm (gnupg)[source]: Use it.
2016-12-21gnu: qemu: Update to 2.8.0.Efraim Flashner
* gnu/packages/qemu.scm (qemu): Update to 2.8.0. [source]: Remove patches. [arguments]: Set host_cc during 'configure. * gnu/packages/patches/qemu-CVE-2016-8576.patch, gnu/packages/patches/qemu-CVE-2016-8577.patch, gnu/packages/patches/qemu-CVE-2016-8577.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-19gnu: kdbusaddons: Embed kinit store dir, avoid dependency cycles.Thomas Danckaert
kdbusaddons needs to know the location of the kdeinit5 executable, provided by kinit. kinit depends on kdbusaddons, so we add bootstrap versions of all packages in the dependency chain from kinit to kdbusaddons to avoid cyclic dependencies. * gnu/packages/kde-frameworks.scm (kinit-bootstrap, kdbusaddons-bootstrap): New variables. (kdbusaddons)[inputs]: Add kinit-bootstrap. [source,arguments]: Add patch and substitution to embed kinit-bootstrap's store directory in the code. * gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19gnu: openssh: Update to 7.4p1.Leo Famulari
* gnu/packages/ssh.scm (openssh): Update to 7.4p1. [source]: Remove 'openssh-memory-exhaustion.patch'. * gnu/packages/patches/openssh-memory-exhaustion.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-16gnu: libupnp: Fix CVE-2016-8863.Leo Famulari
* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file. * gnu/local.mk (dist_patch_DATA): Use it. * gnu/packages/libupnp.scm (libupnp)[source]: Use it.
2016-12-15gnu: Add system test for the rpcbind-daemon service.John Darrington
* gnu/tests/nfs.scm: New file. * gnu/local.mk: Add it.
2016-12-14gnu: Add rust bootstrap binaries.David Craven
* gnu/packages/rust.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm.
2016-12-13gnu: onionshare: Update to 0.9.2 (fixes CVE-2016-5026).Efraim Flashner
* gnu/packages/tor.scm (onionshare): Update to 0.9.2. [source]: Remove patch. [arguments]: Update substitutions for new version. * gnu/packages/patches/onionshare-fix-install-paths.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-12gnu: cssc: Update to 1.4.0.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (cssc): Update to 1.4.0. [source]: Remove unneeded patches (i.e. all of them). * gnu/packages/patches/cssc-gets-undeclared.patch: Delete file. * gnu/packages/patches/cssc-missing-include.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove deleted patches.
2016-12-10Merge branch 'master' into stagingMark H Weaver
2016-12-10gnu: Remove unused patch.Efraim Flashner
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-10gnu: openjpeg: Add fixes for CVE-2016-{9850,9851}.Efraim Flashner
* gnu/packages/image.scm (openjpeg)[replacement]: New field. (openjpeg/fixed): New variable, patch against CVE-2016-9850, CVE-2016-9851. * gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2016-12-09Merge remote-tracking branch 'origin/master' into stagingLudovic Courtès
2016-12-09gnu: libepoxy: Add patch to avoid segfault when GL support is missing.Ludovic Courtès
* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file. * gnu/packages/gl.scm (libepoxy)[source]: Add it. * gnu/local.mk (dist_patch_DATA): Add it.
2016-12-08gnu: tcsh: Fix out of bounds read.Leo Famulari
* gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/shells.scm (tcsh)[replacement]: New field. (tcsh/fixed): New variable.
2016-12-08gnu: Add vis.José Miguel Sánchez García
* gnu/packages/text-editors.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07gnu: cross-base: Move phases to (gnu build cross-toolchain).Ludovic Courtès
* gnu/packages/cross-base.scm (cross-gcc-arguments) <#:phases>: Use 'cross-gcc-build-phases', and move body cross-toolchain.scm. (cross-gcc): Add #:imported-modules. Add (gnu build cross-toolchain) to #:modules. * gnu/build/cross-toolchain.scm: New file, with code from 'cross-gcc-arguments'. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-12-07gnu: readline: support mingw.Jan Nieuwenhuizen
* gnu/packages/patches/readline-7.0-mingw.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/readline.scm (readline): Support MinGW.
2016-12-07gnu: Add mingw-w64.Jan Nieuwenhuizen
* gnu/packages/patches/gcc-4.9.3-mingw-gthr-default.patch, gnu/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch, gnu/packages/mingw.scm: New files. * gnu/local.mk (dist_patch_DATA): Add the patches. (GNU_SYSTEM_MODULES): Add mingw.scm.
2016-12-06gnu: httpd: Add fix for CVE-2016-8740.Efraim Flashner
* gnu/packages/web.scm (httpd)[source]: Add patch for CVE-2016-8740. * gnu/packages/patches/httpd-CVE-2016-8740.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2016-12-06gnu: Add seq24.Ricardo Wurmus
* gnu/packages/music.scm (seq24): New variable. * gnu/packages/patches/seq24-rename-mutex.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch.
2016-12-04gnu: mupdf: Update to 1.10a.Marius Bakke
* gnu/packages/patches/mupdf-CVE-2016-6265.patch: Delete file. * gnu/packages/patches/mupdf-CVE-2016-6525.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7504.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7505.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7506.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7563.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7564.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-8674.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-9017.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-9136.patch: Likewise. * gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Adjust to 1.10a. * gnu/local.mk (dist_patch_DATA): Remove deleted patches. * gnu/packages/pdf.scm (mupdf): Update to 1.10a. [source]: Remove patches.
2016-12-04Merge branch 'master' into stagingMarius Bakke
2016-12-04gnu: Move image viewers to (gnu packages image-viewers).Alex Kost
* gnu/packages/feh.scm (feh): Remove file. Move package to... * gnu/packages/geeqie.scm (geeqie): Likewise... * gnu/packages/sxiv.scm (sxiv): Likewise... * gnu/packages/image-viewers.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove files.
2016-12-04gnu: Rename owncloud.scm to sync.scm.Efraim Flashner
* gnu/packages/owncloud.scm: Rename to ... * gnu/packages/sync.scm: ... this. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2016-12-03gnu: icecat: Update to 45.5.1-gnu1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 45.5.1-gnu1. [source]: Remove temporary URI for 45.3 beta. Fix URI computation. Remove outdated patches. Add more cherry-picked bug fixes from upstream mozilla-esr45. Use 'list' instead of quasiquote in 'patches' field.
2016-12-03gnu: Add fcgi.Ricardo Wurmus
* gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch: New file. * gnu/packages/patches/fcgi-2.4.0-poll.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patches. * gnu/packages/web.scm (fcgi): New variable.
2016-12-01gnu: vtk: Upgrade to 7.1.0.Eric Bavier
* gnu/packages/vtk.scm (vtk): Upgrade to 7.1.0. [source]: Remove patches. Use version-major+minor. * gnu/packages/patches/vtk-mesa-10.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01gnu: netcdf: Upgrade to 4.4.1.1.Eric Bavier
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to 4.4.1.1. [source]: Adjust patch name, add netcdf-tst_h_par.patch * gnu/packages/patches/netcdf-config.date.patch: Rename to... * gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for latest source. * gnu/packages/patches/netcdf-tst_h_par.patch: New patch. * gnu/local.mk (dist_patch_DATA): Adjust patches.
2016-12-01gnu: gst-plugins-good: Update to 1.10.2.Efraim Flashner
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.2. [source]: Remove patches. * gnu/packages/patches/gst-plugins-good-fix-crashes.patch, gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch, gnu/packages/patches/gst-plugins-good-fix-signedness.patch, gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-01gnu: nasm: Switch patch to phase.Efraim Flashner
* gnu/packages/assembly.scm (nasm)[source]: Remove patch. [arguments]: Disable ps and pdf doc outputs in new phase. * gnu/packages/patches/nasm-no-ps-pdf.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-30gnu: Add Nagios.Ludovic Courtès
* gnu/packages/monitoring.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-30Merge branch 'master' into stagingMarius Bakke
2016-11-29services: Add 'cuirass-service'.Mathieu Lirzin
* gnu/services/cuirass.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Continuous integration): New node.
2016-11-29Merge branch 'master' into python-build-systemHartmut Goebel
2016-11-29gnu: cairo: Fix CVE-2016-9082.Efraim Flashner
* gnu/packages/gtk.scm (cairo)[replacement]: New field. (cairo/fixed): New variable. (cairo-xcb)[source]: Use patch. [replacement]: New field, set false. * gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be replaced by a new custom patched cairo. * gnu/packages/patches/cairo-CVE-2016-9082.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2016-11-29gnu: Add viewnior.Efraim Flashner
* gnu/packages/image-viewers.scm (viewnior): New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-27gnu: python-rarfile: Update to 2.8.Leo Famulari
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8. [source]: Remove obsolete patch. * gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-27gnu: gcj: Fix build on armhf.Ricardo Wurmus
* gnu/packages/patches/gcj-arm-mode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/gcc.scm (gcj): Add patch. [arguments]: Delete failing tests.
2016-11-27gnu: Add perl-mojolicious.Ricardo Wurmus
* gnu/packages/perl-web.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-27tests: Add 'opensmtpd-service-type' test.宋文武
* gnu/tests/mail.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-26gnu: cyrus-sasl: Fix CVE-2013-4122.Leo Famulari
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field. (cyrus-sasl/fixed): New variable. [source]: Use patch.
2016-11-26gnu: gst-plugins-good: Fix CVE-2016-{9634,9635,9636} and other security issues.Leo Famulari
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch, gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch, gnu/packages/patches/gst-plugins-good-fix-signedness.patch, gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gstreamer.scm (gst-plugins-good): Use them.
2016-11-26services: Factorize configuration abstraction.Julien Lepiller
* gnu/services/mail.scm and gnu/services/cups.scm (&configuration-error) (configuration-error, configuration-field-error) (configuration-missing-field, configuration-field, serialize-configuration) (validate-configuration, define-configuration, uglify-field-name) (serialize-field, serialize-package, serialize-string) (serialize-space-separated-string-list, space-separated-string-list?) (serialize-file-name, file-name?, serialize-field-name) (generate-documentation): Move duplicate code... * gnu/services/configuration.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add configuration.scm. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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