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2019-02-17gnu: pius: Update to 2.2.7.Tobias Geerinckx-Rice
* gnu/packages/gnupg.scm (pius): Update to 2.2.7. [source]: Remove upstreamed patch. * gnu/packages/patches/pius.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-15gnu: Add genimage.Danny Milosavljevic
* gnu/packages/genimage.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-02-15gnu: LLVM, Clang: Update to 7.0.1.Marius Bakke
* gnu/packages/patches/clang-7.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 7.0.1. (llvm-7.0.1): Remove variable. (clang-from-llvm)[arguments]: Adjust phase to match Clang 7. (llvm-6, clang-runtime-6, clang-6): New public variables. * gnu/packages/dlang.scm (ldc)[native-inputs]: Change LLVM and CLANG to LLVM-6.0 and CLANG-6.0. * gnu/packages/gl.scm (mesa)[inputs]: Change from LLVM to LLVM-6.
2019-02-15gnu: allegro@4: Update to 4.4.3.Tobias Geerinckx-Rice
* gnu/packages/game-development.scm (allegro-4): Update to 4.4.3. [source]: Remove upstreamed patch. * gnu/packages/patches/allegro4-mesa-18.2.5-and-later.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-14gnu: ruby-safe-yaml: Add missing require 'time'.Christopher Baines
Patch ruby-safe-yaml to fix an issue that would lead to an error like this: uninitialized constant SafeYAML::Parse::Date::DateTime It's been reported upstream [1], and this patch was taken from the upstream Git repository. 1: https://github.com/dtao/safe_yaml/issues/80 * gnu/packages/ruby.scm (ruby-safe-yaml)[source]: Switch to the Git repository so that applying patches works and add a patch. [arguments]: Enable tests and add a phase to set the TZ environment variable, as one of the tests depends on a certian timezone. * gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch file.
2019-02-13gnu: dealii: Upgrade to 9.0.1.Eric Bavier
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch. [arguments]: Use new MPI configuration flags.
2019-02-14gnu: qtbase: Restore compilation on linux kernels < 4.11.Andreas Enge
Fixes <https://bugs.gnu.org/34431>. * gnu/packages/patches/qtbase-old-kernel.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/qt.scm (qtbase): Add patch.
2019-02-13gnu: scalapack: Remove use of deprecated MPI1 symbols.Eric Bavier
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (scalapack)[source]: Use it.
2019-02-13gnu: ledger: Update to 3.1.2 [security fixes].Ricardo Wurmus
* gnu/packages/finance.scm (ledger): Update to 3.1.2. [arguments]: Remove #:modules; remove obsolete configure flags; remove make flags; remove phase "boost-compat"; remove custom check phase; remove "relocate-elisp" phase; disable broken test in "check-setup" phase. [native-inputs]: Remove emacs-minimal. [license]: Remove gpl2+. * gnu/packages/patches/ledger-revert-boost-python-fix.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-13gnu: red-eclipse: Fix build.Christopher Baines
Add a patch from the upstream repository [1] that resolves some errors that prevent the package from building [2]. 1: https://github.com/red-eclipse/base/commit/b16b4963c1ad81bb9ef784bc49 2: error: ‘____gammal_r_finite’ was not declared in this scope * gnu/packages/games.scm (red-eclipse)[source] Add patch. * gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch: New file * gnu/local.mk (dist_patch_DATA): Add new patch.
2019-02-12gnu: Move KDE Plasma components to separate module.Marius Bakke
* gnu/packages/kde.scm (libkscreen, libksysguard): Move from here ... * gnu/packages/kde-plasma.scm: ... to here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2019-02-12gnu: runc: Update to 1.0.0-rc6 [fixes CVE-2019-5736].Leo Famulari
* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc6. [source]: Use a descriptive file-name. Add 'runc-CVE-2019-5736.patch' * gnu/packages/patches/runc-CVE-2019-5736.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-02-12gnu: glibc@2.27: fix CVE-2018-11236, CVE-2018-11237.Efraim Flashner
* gnu/packages/base.scm (glibc@2.27)[sources]: Add patches. [properties]: New field, mark CVE-2017-18269 fixed. * gnu/packages/patches/glibc-CVE-2018-11236.patch, gnu/packages/patches/glibc-CVE-2018-11237.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2019-02-10gnu: gnome-shell: Customize the GDM log-in screen.Ludovic Courtès
* gnu/packages/patches/gnome-shell-theme.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gnome-shell)[source](patches, modules) (snippet): New fields. [arguments]: Add 'rebuild-css' phase. [native-inputs]: Add RUBY-SASS.
2019-02-09gnu: emacs-pdf-tools: Update to 0.90.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90. [source]: Remove patch. * gnu/packages/patches/emacs-pdf-tools-poppler.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove reference to deleted file.
2019-02-09gnu: libvpx: Update to 1.8.0.Marius Bakke
* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/video.scm (libvpx): Update to 1.8.0. [source](patches): Remove obsolete patch. (libvpx-1.7): New public variable. * gnu/packages/gnuzilla.scm (icecat)[inputs]: Use LIBVPX-1.7 instead of LIBVPX. * gnu/packages/gstreamer.scm (gst-plugins-good)[source](patches): New field. [arguments]: Add #:make-flags.
2019-02-09Merge branch 'staging'Ludovic Courtès
2019-02-09gnu: cool-retro-term: Upgrade to 1.1.1.Eric Bavier
* gnu/packages/terminals.scm (cool-retro-term)[source]: Upgrade to 1.1.1. Remove patches. Adjust filtering in snippet for added/removed fonts. [arguments]: Return #t in 'add-alternate-name' phase. * gnu/packages/patches/cool-retro-term-dont-check-uninit-member.patch, gnu/packages/patches/cool-retro-term-fix-array-size.patch, gnu/packages/patches/cool-retro-term-memory-leak-1.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-02-07gnu: hdf5: Remove use of deprecated MPI1 symbols.Eric Bavier
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch, gnu/packages/patches/hdf5-mpi-deprecations.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
2019-02-07gnu: superlu-dist: Remove use of deprecated MPI1 symbols.Eric Bavier
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (superlu-dist)[source]: Use it.
2019-02-05gnu: musescore: Update to 3.0.2.Nicolas Goaziou
* gnu/packages/music.scm (musescore): Update to 3.0.2. [source]: Add patch. * gnu/packages/patches/musescore-fix-use_webengine.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference patch.
2019-02-05gnu: nyx: Update to 2.1.0.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (nyx): Update to 2.1.0. [source]: Remove patch. * gnu/packages/patches/nyx-show-header-stats-with-python3.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'mcron-install.patch'.Leo Famulari
This is a followup to commit cfbf6de18cc70d2e385feb5f61f9363f18e78ddf. * gnu/packages/patches/mcron-install.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'ocaml-graph-honor-source-date-epoch.patch'.Leo Famulari
This is a followup to commit 564cf93f2aca60171b4b97559ffc6c952e73e8ed. * gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'ocaml-findlib-make-install.patch'.Leo Famulari
This is a followup to commit bff6739d5ea513417bb491a61aa276c4fb7ddd43. * gnu/packages/patches/ocaml-findlib-make-install.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'python2-rdflib-drop-sparqlwrapper.patch'.Leo Famulari
* gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'openldap-CVE-2017-9287.patch'.Leo Famulari
This is a followup to commit 47415332d70cd9166b0914ce43018ae57083c120. * gnu/packages/patches/openldap-CVE-2017-9287.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'glibc-memchr-overflow-i686.patch'.Leo Famulari
This is a followup to commit 67d527e35e367c9e9e89ec01cda2ce32cabd2d89. * gnu/packages/patches/glibc-memchr-overflow-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-05gnu: Remove unused patch 'net-tools-bitrot.patch'.Leo Famulari
This is a followup to commit b5f610620b65eabd671a5f68d6e6155194101efa. * gnu/packages/patches/net-tools-bitrot.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-04gnu: Remove unused patch 'xboing-CVE-2004-0149.patch'.Leo Famulari
This is a followup to commit 740a335558a440245a2374fae9ffaa3427aa546c. * gnu/packages/patches/xboing-CVE-2004-0149.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-04gnu: Remove unused patch 'ao-cad-aarch64-support.patch'.Leo Famulari
This is a followup to commit 28f4d56dd311a3b4c7102394120de05be6937494. * gnu/packages/patches/ao-cad-aarch64-support.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-04gnu: Remove unused patch 'blender-newer-ffmpeg.patch'.Leo Famulari
This is a followup to commit fc51c28ae8172c9f4370772bd76601f89b9498e6. * gnu/packages/patches/blender-newer-ffmpeg.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-04gnu: Removed unused patch 'readline-7.0-mingw.patch'.Leo Famulari
This patch was introduced in commit ae12d586275cdd96db23fb01bf840b2055b5b979, but it was never used. See <https://bugs.gnu.org/26581> for more information. * gnu/packages/patches/readline-7.0-mingw.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-04gnu: u-boot: Update to 2019.01.Vagrant Cascadian
* gnu/packages/bootloaders.scm (u-boot): Update to 2019.01. (u-boot-tools): Disable CONFIG_SOUND in sandbox configs. (u-boot-pinebook)[source]: Remove patches. * gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch, gnu/packages/patches/u-boot-pinebook-dts.patch, gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch, gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch, gnu/packages/patches/u-boot-pinebook-syscon-node.patch, gnu/packages/patches/u-boot-pinebook-video-bridge.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-02-04gnu: Add gnu-efi.Danny Milosavljevic
* gnu/packages/efi.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-02-02gnu: libreoffice: Fix FTBFS with Boost 1.69.0.Marius Bakke
* gnu/packages/patches/libreoffice-boost.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
2019-01-31Merge branch 'master' into stagingMarius Bakke
2019-01-31gnu: p11-kit: Update to 0.23.15.Marius Bakke
* gnu/packages/patches/p11-kit-jks-timestamps.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/tls.scm (p11-kit): Update to 0.23.15. [source](patches): New field.
2019-01-31gnu: Add python-cypari2 and python2-cypari2.Andreas Enge
* gnu/packages/sagemath.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register new module.
2019-01-31gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778.Leo Famulari
* gnu/packages/patches/qemu-CVE-2018-16872.patch, gnu/packages/patches/qemu-CVE-2019-6778.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them.
2019-01-29gnu: icecat: Add icecat-source.Mark H Weaver
* gnu/packages/gnuzilla.scm (computed-origin-method): New variable. (%icecat-version, icecat-source): New variables. * gnu/packages/patches/icecat-makeicecat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-01-29gnu: x265: Update to 3.0.Efraim Flashner
* gnu/packages/video.scm (x265): Update to 3.0. [source]: Remove patch. * gnu/packages/patches/x265-detect512-all-arches.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-01-28gnu: Add missing file.Ricardo Wurmus
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/installer/newt/user.scm.
2019-01-28gnu: Move most packages from guile.scm to new module.Ricardo Wurmus
* gnu/packages/guile.scm (artanis, guildhall, guile-aspell, guile-bash, guile-8sync, guile-daemon, guile-dsv, guile-fibers, guile-syntax-highlight, guile-sjson, guile-colorized, guile-pfds, guile-aa-tree, guile-simple-zmq, jupyter-guile-kernel, guile-sparql, guile-debbugs, guile-email, guile-debbugs-next, guile-newt, guile-mastodon, guile-parted, guile-xosd, guile-dbi, guile-dbd-sqlite3, guile-config, guile-hall, guile-ics, guile-wisp, guile-sly, g-wrap, guile-miniadapton, guile-reader, guile2.2-reader, guile-ncurses, guile-ncurses/gpm, guile-lib, guile2.0-lib, guile2.2-lib, guile-minikanren, guile2.0-minikanren, guile2.2-minikanren, guile-irregex, guile2.0-irregex, guile2.2-irregex, haunt, guile2.0-haunt, guile2.2-haunt, guile-redis, guile2.0-redis, guile2.2-redis, guile-commonmark, guile2.0-commonmark, guile2.2-commonmark, mcron, mcron2): Move these variables from here... * gnu/packages/guile-xyz.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/installer.scm, gnu/packages/bioinformatics.scm, gnu/packages/ci.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm, gnu/packages/mail.scm, gnu/packages/package-management.scm, gnu/packages/skribilo.scm, gnu/packages/web.scm, gnu/services/mcron.scm: Update module references.
2019-01-25gnu: linkchecker: Fix most test failures.Christopher Baines
Add a patch to skip more tests that require the network. Along with some other changes, this gets all but of one of the tests passing. The remaining test is broken due to a problem with the Python package in Guix, which is fixed by [1] which is currently on the core-updates branch. This patch doesn't work on core-updates due to python2-miniboa not being present. 1: d453b0e11d3f001a8160a7d126fdbf40e45d5042 * gnu/packages/python.scm (linkchecker)[source]: Add patch. [native-inputs]: Add more inputs required for the tests. [arguments]: Enable the tests, move the 'check phase after 'install. Test using the installed software, and use py.test.
2019-01-25superlu-dist: Upgrade to 6.1.0.Eric Bavier
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
2019-01-25scotch: Upgrade to 6.0.6.Eric Bavier
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-01-25gnu: Add Combinatorial BLAS.Eric Bavier
* gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
2019-01-25Merge branch 'master' into stagingRicardo Wurmus
2019-01-23gnu: Add python-coveralls.Ricardo Wurmus
* gnu/packages/python-check.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
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