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2017-01-01gnu: python-dendropy: Update to 4.2.0....* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0. [source]: Remove patch. (python2-dendropy)[source]: Use the same source as python-dendropy. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ben Woodcroft
2016-12-30gnu: libpng: Mention CVE-2016-10087....* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ... * gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust. * gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch. Leo Famulari
2016-12-30gnu: multiqc: Update to 0.9....Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>. * gnu/packages/bioinformatics.scm (multiqc): Update to 0.9. [origin]: Add patch. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2016-12-29gnu: libpng: Fix a null pointer dereference [fixes security issue]....* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libpng)[replacement]: New field. (libpng/fixed): New variable. Leo Famulari
2016-12-24gnu: libxml2: Fix CVE-2016-5131....* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xml.scm (libxml2/fixed)[source]: Add it. Leo Famulari
2016-12-24gnu: libxml2: Fix CVE-2016-4658....* gnu/packages/xml.scm (libxml2)[replacement]: New field. (libxml2/fixed): New variable. * gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Leo Famulari
2016-12-22gnu: gnupg: Fix build on 32-bit architectures....* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnupg.scm (gnupg)[source]: Use it. Marius Bakke
2016-12-21gnu: qemu: Update to 2.8.0....* gnu/packages/qemu.scm (qemu): Update to 2.8.0. [source]: Remove patches. [arguments]: Set host_cc during 'configure. * gnu/packages/patches/qemu-CVE-2016-8576.patch, gnu/packages/patches/qemu-CVE-2016-8577.patch, gnu/packages/patches/qemu-CVE-2016-8577.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2016-12-19gnu: kdbusaddons: Embed kinit store dir, avoid dependency cycles....kdbusaddons needs to know the location of the kdeinit5 executable, provided by kinit. kinit depends on kdbusaddons, so we add bootstrap versions of all packages in the dependency chain from kinit to kdbusaddons to avoid cyclic dependencies. * gnu/packages/kde-frameworks.scm (kinit-bootstrap, kdbusaddons-bootstrap): New variables. (kdbusaddons)[inputs]: Add kinit-bootstrap. [source,arguments]: Add patch and substitution to embed kinit-bootstrap's store directory in the code. * gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2016-12-19gnu: openssh: Update to 7.4p1....* gnu/packages/ssh.scm (openssh): Update to 7.4p1. [source]: Remove 'openssh-memory-exhaustion.patch'. * gnu/packages/patches/openssh-memory-exhaustion.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2016-12-16gnu: libupnp: Fix CVE-2016-8863....* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file. * gnu/local.mk (dist_patch_DATA): Use it. * gnu/packages/libupnp.scm (libupnp)[source]: Use it. Leo Famulari
2016-12-15gnu: Add system test for the rpcbind-daemon service....* gnu/tests/nfs.scm: New file. * gnu/local.mk: Add it. John Darrington
2016-12-14gnu: Add rust bootstrap binaries....* gnu/packages/rust.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm. David Craven
2016-12-13gnu: onionshare: Update to 0.9.2 (fixes CVE-2016-5026)....* gnu/packages/tor.scm (onionshare): Update to 0.9.2. [source]: Remove patch. [arguments]: Update substitutions for new version. * gnu/packages/patches/onionshare-fix-install-paths.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2016-12-12gnu: cssc: Update to 1.4.0....* gnu/packages/version-control.scm (cssc): Update to 1.4.0. [source]: Remove unneeded patches (i.e. all of them). * gnu/packages/patches/cssc-gets-undeclared.patch: Delete file. * gnu/packages/patches/cssc-missing-include.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove deleted patches. Tobias Geerinckx-Rice
2016-12-10Merge branch 'master' into stagingMark H Weaver
2016-12-10gnu: Remove unused patch....* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2016-12-10gnu: openjpeg: Add fixes for CVE-2016-{9850,9851}....* gnu/packages/image.scm (openjpeg)[replacement]: New field. (openjpeg/fixed): New variable, patch against CVE-2016-9850, CVE-2016-9851. * gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2016-12-09Merge remote-tracking branch 'origin/master' into stagingLudovic Courtès
2016-12-09gnu: libepoxy: Add patch to avoid segfault when GL support is missing....* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file. * gnu/packages/gl.scm (libepoxy)[source]: Add it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2016-12-08gnu: tcsh: Fix out of bounds read....* gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/shells.scm (tcsh)[replacement]: New field. (tcsh/fixed): New variable. Leo Famulari
2016-12-08gnu: Add vis....* gnu/packages/text-editors.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Marius Bakke <mbakke@fastmail.com> José Miguel Sánchez García
2016-12-07gnu: cross-base: Move phases to (gnu build cross-toolchain)....* gnu/packages/cross-base.scm (cross-gcc-arguments) <#:phases>: Use 'cross-gcc-build-phases', and move body cross-toolchain.scm. (cross-gcc): Add #:imported-modules. Add (gnu build cross-toolchain) to #:modules. * gnu/build/cross-toolchain.scm: New file, with code from 'cross-gcc-arguments'. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ludovic Courtès
2016-12-07gnu: readline: support mingw....* gnu/packages/patches/readline-7.0-mingw.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/readline.scm (readline): Support MinGW. Jan Nieuwenhuizen
2016-12-07gnu: Add mingw-w64....* gnu/packages/patches/gcc-4.9.3-mingw-gthr-default.patch, gnu/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch, gnu/packages/mingw.scm: New files. * gnu/local.mk (dist_patch_DATA): Add the patches. (GNU_SYSTEM_MODULES): Add mingw.scm. Jan Nieuwenhuizen
2016-12-06gnu: httpd: Add fix for CVE-2016-8740....* gnu/packages/web.scm (httpd)[source]: Add patch for CVE-2016-8740. * gnu/packages/patches/httpd-CVE-2016-8740.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2016-12-06gnu: Add seq24....* gnu/packages/music.scm (seq24): New variable. * gnu/packages/patches/seq24-rename-mutex.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. Ricardo Wurmus
2016-12-04gnu: mupdf: Update to 1.10a....* gnu/packages/patches/mupdf-CVE-2016-6265.patch: Delete file. * gnu/packages/patches/mupdf-CVE-2016-6525.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7504.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7505.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7506.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7563.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-7564.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-8674.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-9017.patch: Likewise. * gnu/packages/patches/mupdf-CVE-2016-9136.patch: Likewise. * gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Adjust to 1.10a. * gnu/local.mk (dist_patch_DATA): Remove deleted patches. * gnu/packages/pdf.scm (mupdf): Update to 1.10a. [source]: Remove patches. Marius Bakke
2016-12-04Merge branch 'master' into stagingMarius Bakke
2016-12-04gnu: Move image viewers to (gnu packages image-viewers)....* gnu/packages/feh.scm (feh): Remove file. Move package to... * gnu/packages/geeqie.scm (geeqie): Likewise... * gnu/packages/sxiv.scm (sxiv): Likewise... * gnu/packages/image-viewers.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove files. Alex Kost
2016-12-04gnu: Rename owncloud.scm to sync.scm....* gnu/packages/owncloud.scm: Rename to ... * gnu/packages/sync.scm: ... this. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it. Efraim Flashner
2016-12-03gnu: icecat: Update to 45.5.1-gnu1....* gnu/packages/gnuzilla.scm (icecat): Update to 45.5.1-gnu1. [source]: Remove temporary URI for 45.3 beta. Fix URI computation. Remove outdated patches. Add more cherry-picked bug fixes from upstream mozilla-esr45. Use 'list' instead of quasiquote in 'patches' field. Mark H Weaver
2016-12-03gnu: Add fcgi....* gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch: New file. * gnu/packages/patches/fcgi-2.4.0-poll.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patches. * gnu/packages/web.scm (fcgi): New variable. Ricardo Wurmus
2016-12-01gnu: vtk: Upgrade to 7.1.0....* gnu/packages/vtk.scm (vtk): Upgrade to 7.1.0. [source]: Remove patches. Use version-major+minor. * gnu/packages/patches/vtk-mesa-10.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2016-12-01gnu: netcdf: Upgrade to 4.4.1.1....* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to 4.4.1.1. [source]: Adjust patch name, add netcdf-tst_h_par.patch * gnu/packages/patches/netcdf-config.date.patch: Rename to... * gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for latest source. * gnu/packages/patches/netcdf-tst_h_par.patch: New patch. * gnu/local.mk (dist_patch_DATA): Adjust patches. Eric Bavier
2016-12-01gnu: gst-plugins-good: Update to 1.10.2....* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.2. [source]: Remove patches. * gnu/packages/patches/gst-plugins-good-fix-crashes.patch, gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch, gnu/packages/patches/gst-plugins-good-fix-signedness.patch, gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2016-12-01gnu: nasm: Switch patch to phase....* gnu/packages/assembly.scm (nasm)[source]: Remove patch. [arguments]: Disable ps and pdf doc outputs in new phase. * gnu/packages/patches/nasm-no-ps-pdf.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2016-11-30gnu: Add Nagios....* gnu/packages/monitoring.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ludovic Courtès
2016-11-30Merge branch 'master' into stagingMarius Bakke
2016-11-29services: Add 'cuirass-service'....* gnu/services/cuirass.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Continuous integration): New node. Mathieu Lirzin
2016-11-29Merge branch 'master' into python-build-systemHartmut Goebel
2016-11-29gnu: cairo: Fix CVE-2016-9082....* gnu/packages/gtk.scm (cairo)[replacement]: New field. (cairo/fixed): New variable. (cairo-xcb)[source]: Use patch. [replacement]: New field, set false. * gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be replaced by a new custom patched cairo. * gnu/packages/patches/cairo-CVE-2016-9082.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2016-11-29gnu: Add viewnior....* gnu/packages/image-viewers.scm (viewnior): New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Efraim Flashner
2016-11-27gnu: python-rarfile: Update to 2.8....* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8. [source]: Remove obsolete patch. * gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2016-11-27gnu: gcj: Fix build on armhf....* gnu/packages/patches/gcj-arm-mode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/gcc.scm (gcj): Add patch. [arguments]: Delete failing tests. Ricardo Wurmus
2016-11-27gnu: Add perl-mojolicious....* gnu/packages/perl-web.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2016-11-27tests: Add 'opensmtpd-service-type' test....* gnu/tests/mail.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. 宋文武
2016-11-26gnu: cyrus-sasl: Fix CVE-2013-4122....* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field. (cyrus-sasl/fixed): New variable. [source]: Use patch. Leo Famulari
2016-11-26gnu: gst-plugins-good: Fix CVE-2016-{9634,9635,9636} and other security issues....* gnu/packages/patches/gst-plugins-good-fix-crashes.patch, gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch, gnu/packages/patches/gst-plugins-good-fix-signedness.patch, gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gstreamer.scm (gst-plugins-good): Use them. Leo Famulari
2016-11-26services: Factorize configuration abstraction....* gnu/services/mail.scm and gnu/services/cups.scm (&configuration-error) (configuration-error, configuration-field-error) (configuration-missing-field, configuration-field, serialize-configuration) (validate-configuration, define-configuration, uglify-field-name) (serialize-field, serialize-package, serialize-string) (serialize-space-separated-string-list, space-separated-string-list?) (serialize-file-name, file-name?, serialize-field-name) (generate-documentation): Move duplicate code... * gnu/services/configuration.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add configuration.scm. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Julien Lepiller
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