| Age | Commit message (Expand) | Author |
|---|
| 2016-01-23 | gnu: Add TopHat....* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
| Ricardo Wurmus |
| 2016-01-20 | gnu: Add NQC....* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Eric Bavier |
| 2016-01-20 | gnu: linux-libre: Add fix for CVE-2016-0728....* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
| Mark H Weaver |
| 2016-01-20 | gnu: arb: Update to 2.8.1....* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
| Andreas Enge |
| 2016-01-15 | gnu: Add radicale....* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Leo Famulari |
| 2016-01-14 | gnu: Add python-docker-py....* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
| David Thompson |
| 2016-01-14 | gnu: bowtie: Update to 2.2.6....* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
| Ricardo Wurmus |
| 2016-01-12 | gnu: boost: Update to 1.60.0....* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
| Eric Bavier |
| 2016-01-12 | gnu: sudo: Add fix for CVE-2015-5602....* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
| Mark H Weaver |
| 2016-01-11 | gnu: bedtools: Update to 2.25.0....* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
| Ben Woodcroft |
| 2016-01-07 | gnu: w3m: Enable SSL, disable broken protocols and ciphers....Fixes <http://bugs.gnu.org/16791>.
* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
| Leo Famulari |
| 2016-01-07 | gnu: w3m: Update patch to use '-p1'....* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
| Leo Famulari |
| 2016-01-05 | gnu: Add LDC....* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
(dist_patch_DATA): Add patch file.
| Roel Janssen |
| 2016-01-04 | gnu: gtk+: Add patch to support GUIX_GTK3_PATH....* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
| Ricardo Wurmus |
| 2016-01-04 | gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH....* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
| Ricardo Wurmus |
| 2016-01-04 | gnu: julia: Update to 0.4.2....* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
| Ricardo Wurmus |
| 2016-01-02 | gnu: Add Asymptote....* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
| Eric Bavier |
| 2015-12-30 | gnu: Move cursynth to (gnu packages music)....* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
| Leo Famulari |
| 2015-12-29 | gnu: fuse: Update to 2.9.4....* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
[source]: Remove patch.
| Leo Famulari |
| 2015-12-23 | gnu: icecat: Update to 38.5.0-gnu1....* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-7205.patch,
gnu/packages/patches/icecat-CVE-2015-7210.patch,
gnu/packages/patches/icecat-CVE-2015-7212.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7214.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
[source]: Remove patches.
| Mark H Weaver |
| 2015-12-21 | gnu: grub: Add fix for CVE-2015-8730....* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
| Leo Famulari |
| 2015-12-18 | gnu: Add dovecot service...* gnu/services/mail.scm: New file.
(&dovecot-configuration-error, dovecot-configuration-error?)
(dovecot-service, dovecot-configuration, dict-configuration)
(passdb-configuration, userdb-configuration)
(unix-listener-configuration, fifo-listener-configuration)
(inet-listener-configuration, service-configuration)
(protocol-configuration, plugin-configuration, mailbox-configuration)
(namespace-configuration, opaque-dovecot-configuration): New public
variables.
* gnu-system.am (GNU_SYSTEM_MODULES): Add (gnu services mail).
* doc/guix.texi (Mail Services): New node.
| Andy Wingo |
| 2015-12-17 | gnu: icecat: Add fixes for several security flaws....* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-7205.patch,
gnu/packages/patches/icecat-CVE-2015-7210.patch,
gnu/packages/patches/icecat-CVE-2015-7212.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7214.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
| Mark H Weaver |
| 2015-12-15 | gnu: python-ipython: Patch 'ctypes' bug....* gnu/packages/patches/python-ipython-inputhook-ctype.patch: New patch.
* gnu/packages/python.scm (python-ipython): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
| Federico Beffa |
| 2015-12-14 | gnu: bluez: Update to 5.36....* gnu/packages/linux.scm (bluez): Update to 5.36.
[source]: Remove patch.
* gnu/packages/patches/bluez-tests.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
| Efraim Flashner |
| 2015-12-11 | gnu: Move sparsehash to datastructures module....* gnu/packages/crypto.scm (sparsehash): Move variable to...
* gnu/packages/datastructures.scm: ...new file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Ricardo Wurmus |
| 2015-12-07 | gnu: libxml2: Update to 2.9.3....* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-8035.patch,
gnu/packages/patches/libxml2-bug-737840.patch,
gnu/packages/patches/libxml2-bug-738805.patch,
gnu/packages/patches/libxml2-bug-746048.patch,
gnu/packages/patches/libxml2-bug-747437.patch,
gnu/packages/patches/libxml2-bug-751603.patch,
gnu/packages/patches/libxml2-bug-751631.patch,
gnu/packages/patches/libxml2-bug-754946.patch,
gnu/packages/patches/libxml2-bug-754947.patch,
gnu/packages/patches/libxml2-bug-755857.patch,
gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
gnu/packages/patches/libxml2-node-sort-order-pt2.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2): Update to 2.9.3. Remove patches.
| Mark H Weaver |
| 2015-12-05 | gnu: Add python-configobj....* gnu/packages/python.scm (python-configobj, python2-configobj): New
variables.
* gnu/packages/patches/python-configobj-setuptools.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
| Leo Famulari |
| 2015-12-04 | gnu: icecat: Update to 38.4.0-gnu1....* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
gnu/packages/patches/icecat-CVE-2015-7188.patch,
gnu/packages/patches/icecat-CVE-2015-7189.patch,
gnu/packages/patches/icecat-CVE-2015-7193.patch,
gnu/packages/patches/icecat-CVE-2015-7194.patch,
gnu/packages/patches/icecat-CVE-2015-7196.patch,
gnu/packages/patches/icecat-CVE-2015-7197.patch,
gnu/packages/patches/icecat-CVE-2015-7198.patch,
gnu/packages/patches/icecat-CVE-2015-7199.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.4.0-gnu1. Remove the
obsolete patches.
| Mark H Weaver |
| 2015-12-02 | gnu: python-matplotlib: Add 'TkAgg' backend and update to version '1.4.3'....* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Do it.
* gnu/packages/patches/matplotlib-setupext-tk.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch.
| Federico Beffa |
| 2015-11-30 | gnu: Add cereal....* gnu/packages/serialization.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Ricardo Wurmus |
| 2015-11-29 | gnu: python: Make 'sys.version' deterministic....* gnu/packages/patches/python-2-deterministic-build-info.patch,
gnu/packages/patches/python-3-deterministic-build-info.patch: New
files.
* gnu/packages/python.scm (python-2, python): Use them.
* gnu-system.am (dist_patch_DATA): Add them.
| Ludovic Courtès |
| 2015-11-29 | gnu: python-2: Honor 'SOURCE_DATE_EPOCH'....* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
[arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
procedure.
(%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
| Ludovic Courtès |
| 2015-11-29 | gnu: tcl: Produce 'tclIndex' files deterministically....* gnu/packages/patches/tcl-mkindex-deterministic.patch: New patch.
* gnu/packages/tcl.scm (tcl)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
| Ludovic Courtès |
| 2015-11-29 | tk: Hardcode path to TK_LIBRARY....Fixes <http://bugs.gnu.org/20889>.
* gnu/packages/patches/tk-find-library.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tk)[source]: Add patch.
| 宋文武 |
| 2015-11-29 | gnu: weechat: Dynamically link against libpython2.7.so....* gnu/packages/patches/weechat-python.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/weechat.scm (weechat)[source]: Use it.
| Ludovic Courtès |
| 2015-11-28 | gnu: jasper: Patch CVE-2008-3522....* gnu/packages/patches/jasper-CVE-2008-3522.patch: New file.
* gnu/packages/image.scm (jasper)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
| Ludovic Courtès |
| 2015-11-25 | gnu: Add kodi....* gnu/packages/kodi.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| David Thompson |
| 2015-11-25 | gnu: Add tinyxml....* gnu/packages/xml.scm (tinyxml): New variable.
* gnu/packages/patches/tinyxml-use-stl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
| David Thompson |
| 2015-11-25 | gnu: Add Ragel....* gnu/packages/ragel.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Ricardo Wurmus |
| 2015-11-25 | gnu: dico: Sort entries in .a files deterministically....* gnu/packages/patches/dico-libtool-deterministic.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
[arguments]: Add #:make-flags.
* gnu-system.am (dist_patch_DATA): Add the patch.
| Ludovic Courtès |
| 2015-11-24 | gnu: Add GNU Dico....* gnu/packages/dico.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Ludovic Courtès |
| 2015-11-24 | build: Add rsem patch to the distribution....This file was added in commit 66e3eff1.
* gnu-system.am (dist_patch_DATA): Add rsem-makefile.patch.
| Ludovic Courtès |
| 2015-11-20 | gnu: Add Synfig....* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
| Ricardo Wurmus |
| 2015-11-20 | gnu: Add ETL....* gnu/packages/animation.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| Ricardo Wurmus |
| 2015-11-20 | gnu: hwloc: Update to 1.11.1....* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
[source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
| Eric Bavier |
| 2015-11-20 | gnu: guitarix: Update to 0.34.0....* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
| Ricardo Wurmus |
| 2015-11-20 | gnu: preseq: Update to 2.0....* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
file.
* gnu-system.am (dist_patch_DATA): Remove them.
| Ricardo Wurmus |
| 2015-11-18 | gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805....* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
| Mark H Weaver |
| 2015-11-18 | gnu: libxslt: Add fix for CVE-2015-7995....* gnu/packages/patches/libxslt-CVE-2015-7995.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[source]: Add patch.
| Mark H Weaver |
