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2018-03-06gnu: samtools: Update to 1.7....* gnu/packages/bioinformatics.scm (samtools): Update to 1.7. Ricardo Wurmus
2018-03-06gnu: htslib: Update to 1.7....* gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field. Ricardo Wurmus
2018-03-06gnu: r-rhdf5: Make build reproducible....* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file. Ricardo Wurmus
2018-03-06gnu: r-lambda-r: Run unit tests....* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit. [arguments]: Add build phase to delete test logs. Ricardo Wurmus
2018-03-06gnu: r-gtools: Make output deterministic....* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid running tempdir at build time. Ricardo Wurmus
2018-03-06ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar....Previously, if ~/.cache was not write-accessible, 'guix' would exit with code 1 without printing any message. That was because the 'make-stack' call would fail since the exception (a 'system-error) came from 'compile-file', which was called at a point where TAG wasn't installed yet. Secondly, to mimick auto-compilation behavior, we just swallow 'system-error raised by 'compile-file'. Reported by Clément Lassieur. * guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of TAG. Catch 'system-error around it and ignore it. Ludovic Courtès
2018-03-06gnu: emacs-transmission: Update to 0.12.1....* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1. Oleg Pykhalov
2018-03-06gnu: haskell-mode: Fix find emacs-stream elisp directory....* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with "\\.el$" in ‘el-dir’. Oleg Pykhalov
2018-03-06gnu: ovmf: Fix build and add FIXME....* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME about failing script. Rutger Helling
2018-03-05gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version....* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>: Modify fix-version to use the distibution version of java-aqute-bndlib. Gábor Boskovits
2018-03-05gnu: perl-email-address: Update to 1.909....* gnu/packages/perl.scm (perl-email-address): Update to 1.909. Tobias Geerinckx-Rice
2018-03-05gnu: perl-sub-quote: Update to 2.005000....* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000. Tobias Geerinckx-Rice
2018-03-05gnu: perl-xml-compile-cache: Update to 1.06....* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06. Tobias Geerinckx-Rice
2018-03-05gnu: perl-xml-rss: Update to 1.60....* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60. Tobias Geerinckx-Rice
2018-03-05gnu: editres: Update to 1.0.7....* gnu/packages/xorg.scm (editres): Update to 1.0.7. Tobias Geerinckx-Rice
2018-03-05gnu: tocc, libtocc: Use HTTPS home page....* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2018-03-05gnu: perl-io-socket-ip: Update to 0.39....* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39. Tobias Geerinckx-Rice
2018-03-05gnu: perl-www-mechanize: Update to 1.87....* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87. Tobias Geerinckx-Rice
2018-03-05gnu: openvpn: Mark up description....* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn. Tobias Geerinckx-Rice
2018-03-05gnu: openvpn: Update to 2.4.5....* gnu/packages/vpn.scm (openvpn): Update to 2.4.5. Tobias Geerinckx-Rice
2018-03-05gnu: papi: Use HTTPS home page....* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2018-03-05gnu: papi: Fix documentation location....* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’ to a customary subdirectory of /share/doc. Tobias Geerinckx-Rice
2018-03-05gnu: xpra: Update to 2.2.5....* gnu/packages/xorg.scm (xpra): Update to 2.2.5. Rutger Helling
2018-03-05ui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3....Fixes <https://bugs.gnu.org/29226> for the most part. * guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3. Ludovic Courtès
2018-03-05nls: Add Simplified Chinese translation.Ludovic Courtès
2018-03-05build: Default to berlin.guixsd.org substitutes on aarch64....Suggested by Efraim Flashner <efraim@flashner.co.il>. * config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on aarch64. Ludovic Courtès
2018-03-05build: Always use https substitute URLs....* config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls). Ludovic Courtès
2018-03-05doc: Adjust 'xset -fp' command to avoid symlinks....Fixes <https://bugs.gnu.org/30655>. Reported by Marco van Hulten <marco@hulten.org>. * doc/guix.texi (Application Setup): Adjust 'xset +fp' example. Ludovic Courtès
2018-03-05gnu: linux-libre@4.14: Update to 4.14.24....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-03-05gnu: linux-libre@4.9: Update to 4.9.86....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86. Mark H Weaver
2018-03-05gnu: linux-libre@4.4: Update to 4.4.120....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120. Mark H Weaver
2018-03-05gnu: Add emacs-terraform-mode....* gnu/packages/emacs.scm (emacs-terraform-mode): New variable. Christopher Baines
2018-03-05gnu: Add emacs-hcl-mode....* gnu/packages/emacs.scm (emacs-hcl-mode): New variable. Christopher Baines
2018-03-05services: Add openntpd service....* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to set openntpd daemon's user and localstatedir. Add a custom phase to not try to create said directory at install time. * gnu/services/networking.scm (<openntpd-configuration>): New record type. (openntpd-shepherd-service, openntpd-service-activation): New procedures. (openntpd-service-type): New variable. * doc/guix.texi (Networking Services): Add openntpd documentation. Efraim Flashner
2018-03-04gnu: papi: Update phase style....* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt. Tobias Geerinckx-Rice
2018-03-04gnu: tomb: Update phase style....* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice
2018-03-04gnu: tomb: Use HTTPS home page....* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2018-03-04gnu: footswitch: Update to 0.1-2.deedd87....* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87. Tobias Geerinckx-Rice
2018-03-04gnu: footswitch: Remove redundant MKDIR-P....* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P before INSTALL-FILE. Tobias Geerinckx-Rice
2018-03-04gnu: gitolite: Update phase style....* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice
2018-03-04gnu: gitolite: Update to 3.6.7....* gnu/packages/version-control.scm (gitolite): Update to 3.6.7. Tobias Geerinckx-Rice
2018-03-04gnu: ii, sic: Use HTTPS home pages....* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2018-03-04gnu: ii: Update to 1.8....* gnu/packages/irc.scm (ii): Update to 1.8. Tobias Geerinckx-Rice
2018-03-04gnu: cloc: Update phase style....* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice
2018-03-04gnu: cloc: Update to 1.76....* gnu/packages/code.scm (cloc): Update to 1.76. [source]: Update origin URI scheme. [inputs]: Add perl-parallel-forkmanager. Tobias Geerinckx-Rice
2018-03-04gnu: liblo: Mark up description....* gnu/packages/audio.scm (liblo)[description]: Use @dfn. Tobias Geerinckx-Rice
2018-03-04gnu: multipath-tools: Update to 0.7.4....* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4. [source]: Download using HTTPS. Marius Bakke
2018-03-04gnu: freexl: Update to 1.0.5 [security fixes]....Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and CVE-2018-7439. * gnu/packages/xml.scm (freexl): Update to 1.0.5. Marius Bakke
2018-03-04gnu: ceph: Update to 12.2.4....* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to upstream changes. * gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 12.2.4. [source](patches): Adjust. [arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable. [native-inputs]: Add GPERF. [inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE. Marius Bakke
2018-03-04gnu: Add cmake@3.11....* gnu/packages/cmake.scm (cmake-3.11): New public variable. Marius Bakke
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