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2018-03-11gnu: Add pigx-bsseq....* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable. Ricardo Wurmus
2018-03-11gnu: Add pigx-chipseq....* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable. Ricardo Wurmus
2018-03-11gnu: icedtea-8: Build "out" reproducibly....Partially fixes <https://bugs.gnu.org/30730>. * gnu/packages/java.scm (icedtea-8)[arguments]: Add phases "patch-keystore" and "strip-jar-timestamps". [source]: Also patch DIST_ID in "configure" script. Ricardo Wurmus
2018-03-11gnu: gambit-c: Update to 4.8.9....* gnu/packages/scheme.scm (gambit-c): Update to 4.8.9. Tobias Geerinckx-Rice
2018-03-11gnu: sssd: Update to 1.16.1....* gnu/packages/sssd.scm (sssd): Update to 1.16.1. Tobias Geerinckx-Rice
2018-03-11gnu: git-remote-gcrypt: Update to 1.0.3....* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.3. Tobias Geerinckx-Rice
2018-03-11gnu: archivemount: Update to 0.8.9....* gnu/packages/linux.scm (archivemount): Update to 0.8.9. Tobias Geerinckx-Rice
2018-03-10gnu: haunt: Update to 0.2.2....* gnu/packages/guile.scm (haunt): Update to 0.2.2. David Thompson
2018-03-10gnu: guile-syntax-highlight: Update to 0.1....* gnu/packages/guile.scm (guile-syntax-highlight): Update to 0.1. David Thompson
2018-03-10gnu: enlightenment: Use 'loginctl' for system actions....* gnu/packages/enlightenment.scm (enlightenment)[arguments]: Use 'loginctl' functions when powering off, sleeping, rebooting or suspending the system. Efraim Flashner
2018-03-10gnu: zsh: Fix CVE-2018-{7548,7549}....* gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/shells.scm (zsh)[source]: Use them. Leo Famulari
2018-03-10services: databases: Add postgresql-configuration record exports....* gnu/services/databases.scm: Export the record type, and all the field accessors. Christopher Baines
2018-03-10tests: databases: Add a system test for PostgreSQL....* gnu/tests/databases.scm (%postgresql-os, %test-postgresql): New variables. (run-postgresql-test): New procedure. Christopher Baines
2018-03-10services: Rework the PostgreSQL config file to use a record type....For the default config file representation. This makes it possible to more easily change the configuration file, and have dynamic content. * gnu/services/databases.scm (<postgresql-config-file>): New record type. (%default-postgres-config): Remove this, it's been replaced by the configuration file. (<postgresql-configuration>): Alter the default for the config file field. (postgresql-service): Alter the default value for the config-file parameter. Christopher Baines
2018-03-10gnu: r-minimal: Respect SOURCE_DATE_EPOCH in srcfile....Fixes <https://bugs.gnu.org/30729>. * gnu/packages/statistics.scm (r-minimal)[arguments]: Replace timestamp hack with patch to "srcfile" and "srcfilecopy". Ricardo Wurmus
2018-03-10gnu: xprop: Update to 1.2.3....* gnu/packages/xorg.scm (xprop): Update to 1.2.3. Marius Bakke
2018-03-10gnu: xpr: Update to 1.0.5....* gnu/packages/xorg.scm (xpr): Update to 1.0.5. Marius Bakke
2018-03-10gnu: xlsfonts: Update to 1.0.6....* gnu/packages/xorg.scm (xlsfonts): Update to 1.0.6. Marius Bakke
2018-03-10gnu: xkill: Update to 1.0.5....* gnu/packages/xorg.scm (xkill): Update to 1.0.5. Marius Bakke
2018-03-10gnu: xbacklight: Update to 1.2.2....* gnu/packages/xorg.scm (xbacklight): Update to 1.2.2. Marius Bakke
2018-03-10gnu: xwininfo: Update to 1.1.4....* gnu/packages/xorg.scm (xwininfo): Update to 1.1.4. Marius Bakke
2018-03-10gnu: xset: Update to 1.2.4....* gnu/packages/xorg.scm (xset): Update to 1.2.4. Marius Bakke
2018-03-10gnu: xwd: Update to 1.0.7....* gnu/packages/xorg.scm (xwd): Update to 1.0.7. Marius Bakke
2018-03-10gnu: xlsclients: Update to 1.1.4....* gnu/packages/xorg.scm (xlsclients): Update to 1.1.4. Marius Bakke
2018-03-10gnu: xmessage: Update to 1.0.5....* gnu/packages/xorg.scm (xmessage): Update to 1.0.5. Marius Bakke
2018-03-10gnu: xinit: Update to 1.4.0....* gnu/packages/xorg.scm (xinit): Update to 1.4.0. Marius Bakke
2018-03-10gnu: xwud: Update to 1.0.5....* gnu/packages/xorg.scm (xwud): Update to 1.0.5. Marius Bakke
2018-03-10gnu: xsetroot: Update to 1.1.2....* gnu/packages/xorg.scm (xsetroot): Update to 1.1.2. Marius Bakke
2018-03-10gnu: xrefresh: Update to 1.0.6....* gnu/packages/xorg.scm (xrefresh): Update to 1.0.6. Marius Bakke
2018-03-10gnu: xrdb: Update to 1.1.1....* gnu/packages/xorg.scm (xrdb): Update to 1.1.1. Marius Bakke
2018-03-10gnu: xfontsel: Update to 1.0.6....* gnu/packages/xorg.scm (xfontsel): Update to 1.0.6. Marius Bakke
2018-03-10gnu: xcursor-themes: Update to 1.0.5....* gnu/packages/xorg.scm (xcursor-themes): Update to 1.0.5. Marius Bakke
2018-03-10gnu: xbitmaps: Update to 1.1.2....* gnu/packages/xorg.scm (xbitmaps): Update to 1.1.2. Marius Bakke
2018-03-10linux-initrd: Autoload known-module-aliases....* gnu/system/linux-initrd.scm: Autoload known-module-aliases. Danny Milosavljevic
2018-03-09gnu: linux-libre: Update to 4.15.8....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.8. (%linux-libre-hash): Update hash. Mark H Weaver
2018-03-09gnu: linux-libre@4.14: Update to 4.14.25....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.25. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-03-10linux-initrd: Skip initrd module check when 'modules.alias' can't be found....Fixes <https://bugs.gnu.org/30760>. Reported by Tomáš Čech <sleep_walker@gnu.org>. * gnu/system/linux-initrd.scm (check-device-initrd-modules): Call 'known-module-aliases' and catch 'system-error around it. Pass it to 'matching-modules'. Ludovic Courtès
2018-03-09gnu: 'autoconf-wrapper' is no longer a procedure....Fixes <https://bugs.gnu.org/30710>. Suggested by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>. * gnu/packages/autotools.scm (autoconf-wrapper): Rename to... (make-autoconf-wrapper): ... this. Add 'properties' field. (autoconf-wrapper): New variable. * gnu/packages/gnunet.scm (guile-gnunet): Adjust accordingly. * gnu/packages/gnupg.scm (signing-party): Likewise. * gnu/packages/guile.scm (guile-ics, guile-bash): Likewise. * gnu/packages/libevent.scm (libuv): Likewise. * gnu/packages/logging.scm (glog): Likewise. * gnu/packages/mail.scm (libetpan): Likewise. * gnu/packages/mate.scm (mate-icon-theme-faenza) (mate-screensaver): Likewise. * gnu/packages/package-management.scm (guix): Likewise. * gnu/packages/sawfish.scm (librep): Likewise. * gnu/packages/video.scm (motion): Likewise. * gnu/packages/zile.scm (zile-on-guile): Likewise. Ludovic Courtès
2018-03-09gnu: linux-libre@4.1: Update to 4.1.50....* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.50. Mark H Weaver
2018-03-09gnu: Update python-django-gravatar2....* gnu/packages/django.scm (python-django-gravatar2)[version]: Update from 1.4.0 to 1.4.2. [source]: Update sha256 hash. [arguments]: Disable the tests, as the django project for the tests is missing. Christopher Baines
2018-03-09gnu: Update python-django-filter to 1.1.0....* gnu/packages/django.scm (python-django-filter)[version]: Update from 0.14.0 to 1.1.0. [source]: Update sha256 hash. [native-inputs]: Add python-djangorestframework and python-django-crispy-forms as native inputs, as they are used in the test suite. Christopher Baines
2018-03-09gnu: Add python-django-crispy-forms....* gnu/packages/django.scm (python-django-crispy-forms): New variable. Christopher Baines
2018-03-09gnu: Add python-djangorestframework....* gnu/packages/django.scm (python-djangorestframework): New variable. Christopher Baines
2018-03-09tests: mail: Add test for dovecot....* gnu/tests/mail.scm (%dovecot-os, %test-dovecot): New variables. (run-dovecot-test): New procedure. Oleg Pykhalov
2018-03-09services: dovecot: Copy dovecot.conf to /etc/dovecot....Many Dovecot utilities compiled with assumption of ‘/etc/dovecot/dovecot.conf’ existence. * gnu/services/mail.scm (dovecot-shepherd-service): Move config generation. Invoke ‘dovecot’ without ‘-c’ flag. (%dovecot-activation): Copy ‘dovecot.conf’ to ‘/etc/dovecot’. (dovecot-service-type): Make ‘%dovecot-activation’ non-constant. Oleg Pykhalov
2018-03-09gnu: r-rhdf5lib: Make build reproducible....* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp and host system kernel version. Ricardo Wurmus
2018-03-09gnu: hdf5: Do not record the build-time kernel version....* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent the kernel version on the build node from affecting the output. Ricardo Wurmus
2018-03-08gnu: r-fnn: Remove duplicate definition....* gnu/packages/cran.scm (r-fnn)[home-page]: Use HTTPS. * gnu/packages/statistics.scm (r-fnn): Remove. Ricardo Wurmus
2018-03-08gnu: Add r-phangorn....* gnu/packages/bioinformatics.scm (r-phangorn): New variable. Ricardo Wurmus
2018-03-08gnu: Add r-smoother....* gnu/packages/cran.scm (r-smoother): New variable. Ricardo Wurmus
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