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2019-03-29gnu: Add r-annotationfuncs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
2019-03-29gnu: Add r-abaenrichment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
2019-03-29gnu: Add r-gofuncr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
2019-03-29gnu: Add r-abadata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abadata): New variable.
2019-03-29gnu: Add r-mapplots.Ricardo Wurmus
* gnu/packages/cran.scm (r-mapplots): New variable.
2019-03-29gnu: Add r-atacseqqc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
2019-03-29gnu: Add r-genomicscores.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
2019-03-29gnu: Add r-motifstack.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
2019-03-29gnu: Add r-motiv.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motiv): New variable.
2019-03-29gnu: Add r-rgadem.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
2019-03-29gnu: Add r-preseqr.Ricardo Wurmus
* gnu/packages/cran.scm (r-preseqr): New variable.
2019-03-29gnu: Add r-bacon.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bacon): New variable.
2019-03-29gnu: php: Fix typo.Ludovic Courtès
Regression introduced in e8cfce439afed945e352ad28f73f0a5f7840f503. * gnu/packages/php.scm (php)[arguments]: Add missing 'else' branch of the 'if'. Change first argument to 'string-prefix?' to match GNU triplets as well.
2019-03-29doc: Fix invalid uses of @ref.Ludovic Courtès
* doc/guix.texi (Invoking guix pull): Use @xref instead of @ref at the beginning of sentences.
2019-03-29gnu: python-faiss: Fix building on non-Intel architectures.Efraim Flashner
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom 'build-swig phase to change build flags for different archictures.
2019-03-29gnu: faiss: Fix building on non-Intel architectures.Efraim Flashner
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel specific headers. [arguments]: Adjust custom 'prepare-build phase to adjust compile flags for different architectures.
2019-03-29gnu: stepmania: Fix all instances of accessing application data.Ricardo Wurmus
This is a follow-up to commit 45aba232abe50b6642abfaa06030985c7febbe07. * gnu/packages/games.scm (stepmania)[arguments]: Rename phase ensure-gtk-module-can-be-found to ensure-application-files-can-be-found and fix remaining instances of application data access.
2019-03-29gnu: Stellarium: Update to 0.19.0.Leo Famulari
* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0. [arguments]: Remove obsolete 'patch-tests' phase.
2019-03-29gnu: stepmania: Fix loading of gtk module.Ricardo Wurmus
Fixes <https://bugs.gnu.org/34854>. Suggested by Nicolas Goaziou. * gnu/packages/games.scm (stepmania)[arguments]: Add phase "ensure-gtk-module-can-be-found".
2019-03-29gnu: zynaddsubfx: Update to 3.0.4.Ricardo Wurmus
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4.
2019-03-29gnu: Add r-abseqr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
2019-03-29gnu: Add r-flexdashboard.Ricardo Wurmus
* gnu/packages/cran.scm (r-flexdashboard): New variable.
2019-03-29gnu: r-png: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/image.scm (r-png): Move from here... * gnu/packages/cran.scm (r-png): ...to here.
2019-03-29gnu: Add r-ggcorrplot.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggcorrplot): New variable.
2019-03-29gnu: Add openclonk.Nicolas Goaziou
* gnu/packages/games.scm (openclonk): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-29gnu: r-cairo: Update to 1.5-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-10. [inputs]: Add zlib.
2019-03-29gnu: hyperrogue: Don't use NAME in hyperrogue-data.Tobias Geerinckx-Rice
* gnu/packages/games.scm (hyperrogue)[native-inputs]: Hard code NAME in hyperrogue-data source URI.
2019-03-29gnu: quadrapassel: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (quadrapassel)[source]: Hard-code NAME.
2019-03-29gnu: libmanette: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (libmanette)[source]: Hard-code NAME.
2019-03-29gnu: frotz-dumb-terminal: Merge strings in URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (frotz-dumb-terminal)[source]: Merge separate string components, probably from a naive ’s/name/"name"/’ substitution.
2019-03-29gnu: frotz: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (frotz)[source]: Hard-code NAME.
2019-03-29gnu: fortune-mod: Don't use NAME in source COMMIT.Tobias Geerinckx-Rice
* gnu/packages/games.scm (fortune-mod)[source]: Hard-code NAME.
2019-03-29gnu: lugaru: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (lugaru)[source]: Hard-code NAME.
2019-03-29gnu: no-more-secrets: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/games.scm (no-more-secrets)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-03-29gnu: hyperrogue: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (hyperrogue)[source]: Hard-code NAME.
2019-03-29gnu: mrrescue: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (mrrescue)[source]: Hard-code NAME.
2019-03-29gnu: laby: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (laby)[source]: Hard-code NAME.
2019-03-29gnu: Add python-bbknn.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bbknn): New variable.
2019-03-29gnu: Add python-annoy.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-annoy): New variable.
2019-03-29gnu: Add python-faiss.Ricardo Wurmus
* gnu/packages/graph.scm (python-faiss): New variable.
2019-03-29gnu: Add faiss.Ricardo Wurmus
* gnu/packages/graph.scm (faiss): New variable.
2019-03-29gnu: red-eclipse: Use GIT-FETCH for data sources.Tobias Geerinckx-Rice
* gnu/packages/games.scm (red-eclipse): Update DATA-SOURCE hashes. [arguments]: COPY-RECURSIVELY instead of extracting tarballs. [inputs]: Use GIT-FETCH and GIT-FILE-NAME for all DATA-SOURCES.
2019-03-29gnu: chromium-bsu: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (chromium-bsu)[source]: Hard-code NAME.
2019-03-29gnu: warzone2100: Update source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (warzone2100)[source]: Update URI and don't hard-code NAME.
2019-03-29gnu: grue-hunter: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (grue-hunter)[source]: Hard-code NAME.
2019-03-29gnu: red-eclipse: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/games.scm (red-eclipse)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-03-29gnu: rust: Fix test setup.Danny Milosavljevic
* gnu/packages/rust.scm (rust-1.30)[arguments]<#:phases> [disable-amd64-avx-test]: Replace. (rust)[arguments]<#:phases>[disable-amd64-avx-test]: Replace.
2019-03-29gnu: rust: Refactor in order to prepare for newer Rust versions.Ivan Petkov
* gnu/packages/rust.scm (rust-source): Rename to... (rust-source-pre-1.32): ...this. Add PATCH-FLAGS. (rust-bootstrapped-package): Rename to... (rust-bootstrapped-package-pre-1.32): ...this. (rust-source): New procedure. (rust-bootstrapped-package): New procedure. (mrustc): Use rust-bootstrapped-package-pre-1.32. (rust-1.19): Use rust-bootstrapped-package-pre-1.32. (rust-1.20): Use rust-bootstrapped-package-pre-1.32. (rust-1.21): Use rust-bootstrapped-package-pre-1.32. (rust-1.22): Use rust-bootstrapped-package-pre-1.32. (rust-1.23): Use rust-bootstrapped-package-pre-1.32. (rust-1.24): Use rust-bootstrapped-package-pre-1.32. (rust-1.25): Use rust-bootstrapped-package-pre-1.32. (rust-1.26): Use rust-bootstrapped-package-pre-1.32. (rust-1.27): Use rust-bootstrapped-package-pre-1.32. (rust-1.28): Use rust-bootstrapped-package-pre-1.32. (rust-1.29): Use rust-bootstrapped-package-pre-1.32. (rust-1.30): Use rust-bootstrapped-package-pre-1.32. (rust): Use rust-bootstrapped-package-pre-1.32. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-29gnu: powwow: Remove redundant FILE-NAME.Tobias Geerinckx-Rice
* gnu/packages/games.scm (powwow)[source]: Remove FILE-NAME.
2019-03-29gnu: openrct2: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/games.scm (openrct2)[source]: Use GIT-FETCH and GIT-FILE-NAME.
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