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2024-01-22gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0. Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6
2024-01-22gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5. [propagated-inputs]: Add r-genomeinfodb. Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6
2024-01-22gnu: r-org-mm-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0. Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a
2024-01-22gnu: r-org-dr-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0. Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
2024-01-22gnu: r-org-dm-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0. Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
2024-01-22gnu: r-org-ce-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0. Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
2024-01-22gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1. Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725
2024-01-22gnu: r-go-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0. Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7
2024-01-22gnu: r-genomeinfodbdata: Update to 1.2.11.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11. Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548
2024-01-22gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3. Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f
2024-01-22gnu: r-reactome-db: Update to 1.86.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2. Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453
2024-01-22gnu: r-org-sc-sgd-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0. Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed
2024-01-22gnu: r-org-bt-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0. Change-Id: I4385882eeb83326af88141b301f892632f6cf678
2024-01-22gnu: r-org-eck12-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0. Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c
2024-01-22import/cran: Set HOME when ExperimentHub is among the inputs.Ricardo Wurmus
* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when ExperimentHub is among inputs. Change-Id: Ie3a2443934704eed8694a76a651b806209722421
2024-01-22import/cran: Also update annotation and experiment packages.Ricardo Wurmus
* guix/import/cran.scm (latest-bioconductor-release): Determine package type and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI. (%bioconductor-updater): Compose all bioconductor predicates. Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
2024-01-22gnu: make-crust-package: Unite firmware and tools.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Perform union of make-crust-firmware and make-crust-tools. * gnu/packages/firmware.scm (make-crust-firmware): New procedure. Change-Id: I687bb6d53aae9bd60ed988baf9d17e92f31faa7b
2024-01-22gnu: Add make-crust-tools.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-tools): New procedure. Change-Id: Iac05ecf1796e4c10692a423c12423ea9b078d141
2024-01-22gnu: make-crust-package: Use or1k-elf as target.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Use or1k-elf as the target. Change-Id: I6c8bf053527f1e12e35402f18cebf8e75557c788
2024-01-22gnu: make-crust-package: Update to 0.6.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Update to 0.6. Do not install host tool as it is not built by default. Change-Id: Ia79ae8208589601d32235f6d8ace9dce3f8d74f9
2024-01-22gnu: make-crust-package: Memoize.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Use mlambda. Change-Id: I2d916b96bc650f3731a69505e086cf8f8f470809
2024-01-22gnu: make-crust-package: Use shorter synopsis.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package) <synopsis>: Make it short. Change-Id: I8b93b25a9a6a75aaa92ffa590d0fd46a5511fd49
2024-01-22gnu: Add gcc-cross-or1k-elf-toolchain.Jean-Pierre De Jesus DIAZ
* gnu/packages/cross-toolchain.scm (gcc-cross-or1k-elf-toolchain): New variable. Change-Id: Iaf7ed60dbbe116a5efbad8e94be9b2dee51faf15
2024-01-22gnu: cross-gcc-toolchain: Use fixed name.Jean-Pierre De Jesus DIAZ
* gnu/packages/cross-base.scm (cross-gcc-toolchain) <name>: Always use gcc-cross- prefix regardless of TARGET having a C standard library or not. Change-Id: I5cbe89c61e5bd324a385db17c27131ea5ef75669
2024-01-22guix: Add ork1-elf platform.Jean-Pierre De Jesus DIAZ
* doc/guix.texi: Document or1k-elf platform. * guix/platforms/or1k.scm (or1k-elf): New variable. * Makefile.am (MODULES): Add guix/platforms/or1k.scm. Change-Id: I3f71a0fa97f1ebd2bbdbf6cd00a93b477a123648
2024-01-22gnu: emacs-orgalist: Fix build.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-orgalist)[source]<origin>: Use correct extension. Change-Id: Idea5aa97de9838b4a7bfabd7e7609727bd925a71
2024-01-22gnu: notmuch: Update to 0.38.2.Nicolas Goaziou
* gnu/packages/mail.scm (notmuch): Update to 0.38.2. * gnu/packages/patches/notmuch-emacs-test-output.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Apply file deletion. Change-Id: I60d0487f2258ed5ef8602de7a624686c5f012a4f
2024-01-22gnu: emacs-ebdb: Fix build.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-ebdb)[propagated-inputs]: Add EMACS-ORG-ROAM. Change-Id: I77c2373dcc50ed4a832bf1d493c44eb0b96ebc7b
2024-01-21gnu: cambalache: Fix buld.Sharlatan Hellseher
As seen in http://ci.guix.gnu.org/build/3338535/log/raw. * gnu/packages/gnome.scm (cambalache): Fix build. [inputs]: Swap duplicated webkitgtk to webkitgtk-for-gtk3. Change-Id: I9604159d3aa343e0bcb539cfade520ddd97cb489
2024-01-22gnu: emacs-org-fc: Update to 0.4.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-fc): Update to 0.4.0. [arguments]<#:phases>: Fix build error by adding missing (require 'eieio). <#:test-command>: Load more tests. [native-inputs]: Add EMACS-EL-MOCK. Change-Id: Ibdaf38f3dd8f3018bf2b7b53cd94626b983fc953
2024-01-22gnu: emacs-el-mock: Update to 1.25.1-1.6cfbc9d.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-el-mock): Update to 1.25.1-1.6cfbc9d. Change-Id: I2e13b8854f9089f68f1ec9eb0fa671e760ea9ec3
2024-01-22gnu: emacs-plz: Update to 0.7.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-plz): Update to 0.7.2. Change-Id: I24ef66998d9a8b83169c185974f2ce2b3697dd4c
2024-01-22gnu: emacs-pg: Update to 0.27.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.27. Change-Id: I10c65f30e790d461c925352b993aa4dc3d6696dd
2024-01-22gnu: emacs-org-re-reveal: Update to 3.25.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.25.1. Change-Id: I79a195184b5d2ad842e4738862086c0b595b967c
2024-01-22gnu: emacs-org-ql: Update to 0.8.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.8.4. Change-Id: Idb2e25155a62cbf699367a749194dce1852339ec
2024-01-22gnu: emacs-julia-snail: Update to 1.3.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-julia-snail): Update to 1.3.1. Change-Id: I4cd574e2864ba23d0edd1331932ecef974466be6
2024-01-22gnu: emacs-helm: Update to 3.9.7.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.9.7. Change-Id: I08be44a04cb5e829517cc6d406efa546b1c5c763
2024-01-22gnu: emacs-hackernews: Update to 0.7.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.7.0. Change-Id: Iba7bc8f02bf747fd2ac80a96bedffd47fe572109
2024-01-22gnu: emacs-gptel: Update to 0.6.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.6.0. [propagated-inputs]: Add EMACS-COMPAT. Change-Id: Ideaef04c6a4e76dc4d86fc490b320e01ce205d02
2024-01-22gnu: emacs-elisp-demos: Improve package style.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos)[arguments]: Use G-expressions. <#:include>: Use default include. Change-Id: I44960fa1d7ddec2d15e6927aa76eafb32a03e627
2024-01-22gnu: emacs-elisp-demos: Update to 2024.01.16.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2024.01.16. Change-Id: Ia23a78b139d3182fd2452658de2f0fbafd052fff
2024-01-22gnu: emacs-edit-indirect: Update to 0.1.11.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-edit-indirect): Update to 0.1.11. Change-Id: I4400a25c749aef604e6ec0afd79df965cf62a831
2024-01-22gnu: emacs-dtrt-indent: Update to 1.16.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-dtrt-indent): Update to 1.16. Change-Id: I55b98386433817c8423d8a7d4c868e3e27a16f46
2024-01-22gnu: emacs-clj-refactor: Update to 3.11.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.11.3. Change-Id: Ifd6131fa4c1360785c2a8e061353f269fcb1c23d
2024-01-22gnu: emacs-cider: Update to 1.13.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.13.0. Change-Id: I0186168caf932111a490f993cc085b455d35765a
2024-01-22gnu: emacs-boon: Update to 1.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-boon): Update to 1.3. Change-Id: I0c62dc2539d460ed6ca387d4c00e3640d65b72c0
2024-01-22gnu: emacs-log4e: Update to 0.4.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-log4e): Update to 0.4.0. Change-Id: I96d0496155e15cd2dc58c5332f8283541070e5f0
2024-01-22gnu: emacs-adwaita-dark-theme: Update to 1.3.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-adwaita-dark-theme): Update to 1.3.0. Change-Id: I6934d7302786ba2b64f3395edc6a77b2f2883485
2024-01-22gnu: emacs-frecency: Update to 1.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-frecency): Update to 1.0. Change-Id: Id3491d73081f768adb7eaa542c48fed6791372f6
2024-01-22gnu: emacs-org-modern: Update to 1.1.Dakota Logan
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 1.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Id009309ba4c5ad1d7db860e5748318cfe5a587bb
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