Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (clipper): New variable.
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* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
variables.
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* gnu/packages/xfce.scm (xfconf)[arguments]: Add #:phases.
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* gnu/packages/bioinformatics.scm (macs): New variable.
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* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
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* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
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* gnu/packages/messaging.scm (libotr): Update to 4.1.0.
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This reverts commit ec4a4c46efaf2e7373f331654640f1321c0f2e62,
because it broke XFCE.
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* gnu/packages/xfce.scm (xfconf): Update to 4.12.0. Disable tests.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.3.
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* gnu/packages/compression.scm (sharutils): Update to 4.15.
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* gnu/packages/gdb.scm (gdb): Update to 7.9.
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Conflicts:
gnu/packages/gnupg.scm
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* gnu/packages/gnupg.scm (gnupg): Update to 2.0.27.
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* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.3.
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* gnu/packages/wget.scm (wget): Update to 1.16.2.
[inputs]: Add PKG-CONFIG.
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* gnu/packages/web.scm (libpsl)[source]: Add 'snippet' and 'modules'
fields.
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* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.19.
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* gnu/packages/lisp.scm (ecl): Update to version 15.2.21, and disable the test
suite because ECL now fails to initialize during 'make check'.
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* gnu/packages/xdisorg.scm (xbindkeys): New variable.
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* gnu/packages/audio.scm (alsa-modular-synth): New variable.
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* gnu/packages/audio.scm (clalsadrv): New variable.
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This reverts commit b479c3ddaf85c831e34888229849bc1ce34419de.
This commit was the result of an incorrect characterization of the
problem; see the log of commit 87c8b92 for details.
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In <http://hydra.gnu.org/build/263170>, we see:
153: 12 [patch-usr-bin-file #:native-inputs #f ...]
[...]
?: 1 [regexp-exec # ...]
In ice-9/boot-9.scm:
106: 0 [#<procedure 1998ec0 at ice-9/boot-9.scm:97:6 (thrown-k . args)> encoding-error ...]
ice-9/boot-9.scm:106:20: In procedure #<procedure 1998ec0 at ice-9/boot-9.scm:97:6 (thrown-k . args)>:
ice-9/boot-9.scm:106:20: Throw to key `encoding-error' with args `("scm_to_stringn" "cannot convert narrow string to output locale" 84 #f #f)'.
This is due to that fact that 'patch-/usr/bin/file' read a line
containing a byte sequence with bytes > 127 (namely a copyright sign.)
But this build was running with a C locale, and so those bytes cannot be
represented in that locale, hence this error.
This commit makes the UTF-8 locales available earlier such that
everything can be represented in locale encoding.
* gnu/packages/commencement.scm (glibc-utf8-locales-final): Move
earlier; change "gzip" input to GZIP built with %BOOT4-INPUTS.
(%boot5-inputs): Define to %BOOT4-INPUTS plus
GLIBC-UTF8-LOCALES-FINAL.
(gnu-make-final, coreutils-final, grep-final): Use it instead of
%BOOT4-INPUTS.
(gzip-final): Remove.
(%boot6-inputs): New variable.
(%final-inputs): Use it instead of %BOOT5-INPUTS. Don't rely on
GZIP-FINAL.
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* gnu/packages/xfce.scm (xfwm4): Add libdrm and libxdamage to inputs.
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* gnu/packages/xfce.scm (xfwm4): Update 4.12.0.
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* gnu/packages/xfce.scm (xfdesktop): Update to 4.12.0.
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* gnu/packages/xfce.scm (thunar-volman): Update to 0.8.1.
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* gnu/packages/xfce.scm (thunar): Update to 1.6.6.
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* gnu/packages/xfce.scm (xfce4-settings): Update to 4.12.0.
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* gnu/packages/xfce.scm (xfce4-session): Update to 4.12.0.
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* gnu/packages/xfce.scm (xfce4-appfinder): Update to 4.12.0.
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* gnu/packages/xfce.scm (xfce4-panel): Update to 4.12.0.
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* gnu/packages/xfce.scm (tumbler): Update to 0.1.31.
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* gnu/packages/xfce.scm (garcon): Update to 0.4.0.
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* gnu/packages/xfce.scm (exo): Update to 0.10.3.
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* gnu/packages/xfce.scm (libxfce4ui): Update to 4.12.0.
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* gnu/packages/xfce.scm (libxfce4util): Update to 4.12.1.
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Previously processes started from the window manager would have a couple
of leaked file descriptors: writable /var/log/slim.log and readable
/gnu/store/…-xinitrc.
* gnu/services/xorg.scm (xinitrc)[builder]: Add 'close-all-fdes'. Use
it in 'exec-from-login-shell'.
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* guix/build/gnu-build-system.scm (gnu-build): Leave
%DEFAULT-PORT-CONVERSION-STRATEGY unchanged when 'string->bytevector'
fails to convert to ISO-8859-1. This is an attempt to work around the
build failures at <http://hydra.gnu.org/build/263002>.
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* gnu/packages/audio.scm (zita-alsa-pcmi): New variable.
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* gnu/packages/audio.scm (lv2-mdaepiano): New variable.
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* gnu/packages/audio.scm (lv2-mdapiano): New variable.
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* gnu/packages/man.scm (txt2man): New variable.
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* gnu/packages/mpd.scm: Use define-public for package variables. Remove
#:exports from module declaration.
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* gnu/packages/mpd.scm (mpd-mpc): New variable.
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* gnu/packages/mpd.scm (ncmpcpp): Update to version 0.6.2. Add boost,
readline, autotools inputs.
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* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
gnu/packages/audio.scm (jack-2, lvtk),
gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
gnu/packages/game-development.scm (tiled),
gnu/packages/games.scm (minetest-data, minetest, retroarch),
gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
gnu/packages/mail.scm (offlineimap, libetpan),
gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
gnu/packages/nutrition.scm (gourmet),
gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
'file-name' field to origin.
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* gnu/packages/audio.scm (soundtouch)[arguments]: Move 'bootstrap'
after 'unpack'. Remove custom /usr/bin/file patching, which will
now be handled by the 'patch-usr-bin-file' phase.
* gnu/packages/emacs.scm (emacs-w3m)[arguments]: Rename 'pre-configure'
phase to 'autoconf' and move it after 'unpack'.
* gnu/packages/fontutils.scm (libuninameslist)[arguments]: Move 'bootstrap'
phase after 'unpack'.
* gnu/packages/libevent.scm (libuv)[arguments]: Move 'autogen' phase after
'unpack'. Run "sh autogen.sh" instead of "./autogen.sh".
* gnu/packages/linux.scm (bridge-utils)[arguments]: Move 'bootstrap' phase
after 'unpack'.
* gnu/packages/mail.scm (libetpan)[arguments]: Move 'autogen' phase after
'unpack'. Run "sh autogen.sh" instead of "./autogen.sh". Setenv
"NOCONFIGURE" before running autogen.sh.
* gnu/packages/package-management.scm (guix-devel)[arguments]: Move
'bootstrap' phase after 'unpack'. Run "sh autogen.sh" instead of
"./autogen.sh".
* gnu/packages/rdf.scm (lrdf)[arguments]: Move 'autoreconf' phase after
'remove-out-of-tree-references' phase.
* gnu/packages/tor.scm (privoxy)[arguments]: Move 'autoconf' phase after
'unpack'.
* gnu/packages/web.scm (libpsl)[arguments]: Move 'bootstrap' phase after
'unpack'. Run "sh autogen.sh" instead of "./autogen.sh". Remove
'fix-autogen-shebang' phase.
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* gnu/packages/mail.scm (mu): Add forgotten copyright line.
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