aboutsummaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2024-04-23doc: Fix mentions of 'nss-certs'.Fabio Natali
* doc/guix.texi (Using the Configuration System): Fix mention of 'nss-certs' after the package has been added to '%default-packages' (see '65e8472a4b6fc6f66871ba0dad518b7d4c63595e'). * doc/guix.texi (Web Services): Fix mention of 'nss-certs' after the package has been added to '%default-packages' (see '65e8472a4b6fc6f66871ba0dad518b7d4c63595e'). Change-Id: Iecdecb8deb440cdea224f3e9e7ce54e89dd575a2 Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
2024-04-22doc: Fix typo.Matthew Trzcinski
* doc/guix.texi (Installing Guix in a VM): Change indefinite article. Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
2024-04-22gnu: Add r-saige.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-saige): New variable. Change-Id: Id5bda4d25ca61fe26d11bae0af19900fd0f0080e
2024-04-22gnu: Add savvy.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (savvy): New variable. Change-Id: I48dcfad2c6c769778bd79dffa084332da53991ad
2024-04-22gnu: Add streambuf-shrinkwrap.Ricardo Wurmus
* gnu/packages/compression.scm (streambuf-shrinkwrap): New variable. Change-Id: I3405b777e18cfd7b505f6de06019353d6c49a797
2024-04-22gnu: Add r-metaskat.Ricardo Wurmus
* gnu/packages/cran.scm (r-metaskat): New variable. Change-Id: I9f9917ca4ecf4a15a8926df0b6dfad0f517a31dd
2024-04-22gnu: Add r-skat.Ricardo Wurmus
* gnu/packages/cran.scm (r-skat): New variable. Change-Id: Ia16c9214dea6ef83081f60d1e93c5849f96ab8f2
2024-04-22gnu: Add r-spatest.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatest): New variable. Change-Id: I0bece84e911e6e57dda0f0075e953304f1e25167
2024-04-22gnu: linux-libre 5.15: Update to 5.15.156.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.156. (linux-libre-5.15-pristine-source): Update hashes. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: I33e9832611372321e9bedb3ae0c1da657ccc5c79
2024-04-22gnu: linux-libre 6.1: Update to 6.1.87.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.87. (linux-libre-6.1-pristine-source): Update hashes. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: I9246f882bbb9f4572a88fef3b1eafc1caffc9fec
2024-04-22gnu: linux-libre 6.6: Update to 6.6.28.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.28. (linux-libre-6.6-pristine-source): Update hashes. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: Ifa0dd02a61e07efcfdf733e8fb12b5bcf5a430ca
2024-04-22gnu: linux-libre 6.8: Update to 6.8.7.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.8-version): Update to 6.8.7. (linux-libre-6.8-pristine-source): Update hashes. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: I8b04b4af1bc62d336366b8f0e7281c9249fc6d7d
2024-04-22gnu: r-tclust: Update to 2.0-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tclust): Update to 2.0-3. [propagated-inputs]: Remove r-cluster, r-mclust, r-mvtnorm, and r-sn; add r-doparallel, r-foreach, r-mass, r-rcpp, and r-rcpparmadillo. Change-Id: I3a39e707461de2aef4bcccc11bb839e8b273f15b
2024-04-22gnu: r-segmented: Update to 2.0-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-4. Change-Id: Iae911494c64b04540c877e2eb31efb933d4d94c6
2024-04-22gnu: r-openssl: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.2. Change-Id: I7d949c4c617940b729d07478902e1ccedcd28c2d
2024-04-22gnu: r-keras: Update to 2.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-keras): Update to 2.15.0. Change-Id: Iff6a980dbe3fb2c118f80029708d3afc8739f0f5
2024-04-22gnu: r-tfruns: Update to 1.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.3. Change-Id: I2c3008b81c269021f8259583e94c7bb8b324b22e
2024-04-22gnu: r-gsa: Update to 1.03.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-gsa): Update to 1.03.3. Change-Id: I2c3712958bfa15c32dac86a4c254c64f4e8dfad0
2024-04-22gnu: r-pkgdown: Update to 2.0.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.9. Change-Id: I06dd2f13fd5fb215e0fa3c9482af75049d6955d8
2024-04-22gnu: r-tune: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tune): Update to 1.2.1. Change-Id: I9167af6ef9f2d7046765ff818c836ba962f6cc7e
2024-04-22gnu: r-flexsurv: Update to 2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-flexsurv): Update to 2.3. Change-Id: If44f31a0171ec910b617e56bc3470e71ab3e1ee1
2024-04-22gnu: r-tolerance: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tolerance): Update to 3.0.0. [propagated-inputs]: Remove r-rgl; add r-plotly. Change-Id: I7edd308af3937baa3384428cab531367e936b637
2024-04-22gnu: r-uwot: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-uwot): Update to 0.2.2. [propagated-inputs]: Add r-rspectra. Change-Id: Iece11fdfb68660f64adc1544eb52f9912335a8af
2024-04-22gnu: r-pamr: Update to 1.56.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-pamr): Update to 1.56.2. Change-Id: I2235d5e24cd2a18c79374d03f5e9225f9a2d9d7f
2024-04-22gnu: r-apcluster: Update to 1.4.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.12. Change-Id: I31b8791336e14c04da776f70617ac5443a6946a4
2024-04-22gnu: r-tm: Update to 0.7-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-tm): Update to 0.7-13. Change-Id: I970c336d647911efbfa4e554ef717c732c3a6bba
2024-04-22gnu: r-targets: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-targets): Update to 1.7.0. [propagated-inputs]: Remove r-digest. Change-Id: I72c95351da2fe453014d25e4403a979dba9b35ec
2024-04-22gnu: r-tarchetypes: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.9.0. [propagated-inputs]: Remove r-digest; add r-secretbase. Change-Id: Ie164cebdf0bab4ef128f0023dbe73a0711893a8c
2024-04-22gnu: r-factominer: Update to 2.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-factominer): Update to 2.11. Change-Id: Id24133b66e55ef6b41710dbc98cbb3daf2ef4b9f
2024-04-22gnu: r-seriation: Update to 1.5.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-seriation): Update to 1.5.5. Change-Id: I1632302f747d4f64e0b26baf9213525c05b6bacb
2024-04-22gnu: python-commonroad-io: Relax requirements.Ricardo Wurmus
* gnu/packages/simulation.scm (python-commonroad-io)[arguments]: Accept 3.20.2 when 3.20.1 is wanted. Change-Id: I5ad0689f827eda8ec1a7ec74008d04fb6d9f5870
2024-04-22gnu: python-omegaconf: Fix build system errors.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-omegaconf)[arguments]: Fix syntax error in version specification; do not trigger errors on deprecation warnings. Change-Id: Ida873c11255ffb65d888378cdd77a9205163016a
2024-04-22gnu: python-deeptools: Replace python-nose with python-pytest.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Replace python-nose with python-pytest. Change-Id: Icba4ed3a464bfa36616aabe2cbbb26bfabec40aa
2024-04-22gnu: java-easymock-class-extension: Use java-asm-8.Ricardo Wurmus
This is necessary to avoid invalid instructions coming from the incompatible build of java-asm. * gnu/packages/java.scm (java-easymock-class-extension)[inputs]: Replace java-asm with java-asm-8. Change-Id: Iff11a54fe62ba71a6d5e62fe80c08b1539c6cee0
2024-04-22gnu: python-pydantic-2: Ignore sensitive tests.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pydantic-2)[arguments]: Ignore north star tests. Change-Id: Ic305f95f8d1399a4d777dad35fcee9e28f16c907
2024-04-22gnu: python-asdf-astropy: Add missing test inputs.Ricardo Wurmus
* gnu/packages/astronomy.scm (python-asdf-astropy)[native-inputs]: Add python-pytest and python-pytest-xdist. Change-Id: I1b08cf3937d4d17e034bebf6c1e971e43ca79839
2024-04-22gnu: python-zarr: Update to 2.17.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.2. [arguments]: Delete two flaky tests. Change-Id: I1ab1c90f17d17a03c6cd76bbeb9112df741cc9c6
2024-04-22gnu: python-xarray-dataclasses: Add missing test input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]: Add python-pytest. Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2
2024-04-22gnu: cpplint: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/cpp.scm (cpplint)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. Change-Id: I270de2cafe75ef2d7280dee884a0aeb060f2aa32
2024-04-22gnu: python-pandas-2: Skip expensive tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI variable. Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb
2024-04-22gnu: Add python-pandas-2.Nicolas Graves
* gnu/packages/python-science.scm (python-pandas-2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I7f0510f9021d4eac3c981e5e58f73dc3ec7efd2f
2024-04-22gnu: Add python-pytest-next.Nicolas Graves
* gnu/packages/check.scm (python-pytest-next): New variable.
2024-04-22gnu: python-contourpy: Update to 1.1.1.Nicolas Graves
* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.1.1. Change-Id: I31ac27bb7f41f04c82baba2650012d4730a4b684
2024-04-22gnu: python-openpyxl: Update to 3.0.10.Nicolas Graves
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 3.0.10. [build-system]: Use pyproject-build-system. [arguments]: Delete check phase replacement. Change-Id: I1a537050f1e9f109189150d0d73e87bbd87dcb00
2024-04-22gnu: python-pytest-xdist: Use pyproject-build-system.Nicolas Graves
* gnu/packages/check.scm (python-pytest-xdist): Use pyproject-build-system.
2024-04-22gnu: python-jinja2: Update to 3.1.2.Nicolas Graves
* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.1.2. Format. [build-system]: Use pyproject-build-system. [arguments]: Remove uneeded argument.
2024-04-22gnu: python-pyproject-metadata: Update to 0.7.1.Nicolas Graves
* gnu/packages/python-xyz.scm (python-pyproject-metadata): Update to 0.7.1.
2024-04-22gnu: Add meson-python/newer.Ricardo Wurmus
* gnu/packages/build-tools.scm (meson-python/newer): New variable. Change-Id: I5f34a1abdffcc2e782a2956c199f1c303911069c
2024-04-22gnu: meson/newer: Update to 1.2.1.Nicolas Graves
* gnu/packages/build-tools.scm (meson/newer): Update to 1.2.1.
2024-04-22gnu: Add python-pims.Ricardo Wurmus
* gnu/packages/image-processing.scm (python-pims): New variable. Change-Id: I33e89dd865a38b526a1f766cf321a6c67a170a36
generated by cgit