| Age | Commit message (Expand) | Author |
|---|
| 2024-05-05 | gnu: python-biom-format: Untangle from python-scikit-bio....* gnu/packages/bioinformatics.scm (python-biom-format)[arguments]: Add phase
'pandas-compatibility; disable tests that need sciki-bio.
[propagated-inputs]: Remove python-scikit-bio.
Change-Id: Ifd528d256a1c75962fb05aef5602edbf67a5af26
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-anndata: Update to 0.10.7....* gnu/packages/python-xyz.scm (python-anndata): Update to 0.10.7.
[arguments]: Patch conftest.py; adjust tests; remove old patch for version
string; add phase 'set-numba-cache-dir.
[native-inputs]: Add python-awkward, python-dask, python-distributed,
python-hatchling, python-hatch-vcs, python-loompy, python-matplotlib,
python-pytest-doctestplus, and python-pytest-xdist.
[propagated-inputs]: Add python-array-api-compat and python-exceptiongroup.
Change-Id: I3099cbfbb1865743c75d32243be9e5a59df1507d
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-array-api-compat....* gnu/packages/python-xyz.scm (python-array-api-compat): New variable.
Change-Id: Ibfd701630b41f860c7ad4df57fd3624d9c5b7752
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-awkward....* gnu/packages/python-xyz.scm (python-awkward): New variable.
Change-Id: Ie4f9b12d3662b9029f6e042f9c3a4d547073a6e7
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-awkward-cpp....* gnu/packages/python-xyz.scm (python-awkward-cpp): New variable.
Change-Id: I68f7e314aa6b575eb7135aa5308c327d5f6bf3ea
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-scikit-build-core....* gnu/packages/python-science.scm (python-scikit-build-core): New variable.
Change-Id: If234d19d720afe88f6893bdd36fcc4955a45c5d3
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-distributed: Update to 2024.4.2....* gnu/packages/python-science.scm (python-distributed): Update to 2024.4.2.
[propagated-inputs]: Add python-dask-expr.
[arguments]: Adjust tests.
Change-Id: I9d3b45d14ae052f3a5a5dec3587bc01d13e4b71f
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-dask-expr....* gnu/packages/python-science.scm (python-dask-expr): New variable.
Change-Id: I691593ab713fe865c771aa68b5521c4c10cc58f6
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-partd: Update to 1.4.1....* gnu/packages/python-xyz.scm (python-partd): Update to 1.4.1.
[propagated-inputs]: Remove python-blosc.
Change-Id: I3aff28899339f9ffaa47b6f5c81e0e68ce660963
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-dask: Update to 2024.4.2....* gnu/packages/python-xyz.scm (python-dask): Update to 2024.4.2.
[arguments]: Disable a few tests.
Change-Id: I759ddee2ec49fbf74f368c3313f7215906b0e5a2
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-tables: Update to 3.7.0....* gnu/packages/python-xyz.scm (python-tables): Update to 3.7.0.
[propagated-inputs]: Add python-packaging and python-py-cpuinfo.
Change-Id: I8653bef9a07bb898933b249aad92ddb2b79b8d85
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pyarrow: Build with ORC support....* gnu/packages/databases.scm (python-pyarrow)[propagated-inputs]: Add
apache-orc.
[arguments]: Set PYARROW_WITH_ORC variable.
Change-Id: Ic35cd1db75349ecb51d35815d710d8ca3a303b00
| Ricardo Wurmus |
| 2024-05-05 | gnu: apache-arrow: Build with ORC....* gnu/packages/databases.scm (apache-arrow)[arguments]: Set options needed to
build with ORC support; remove unused options
-DBENCHMARK_ENABLE_GTEST_TESTS=OFF and -DARROW_GLOG=ON.
[inputs]: Add apache-orc.
Change-Id: Icabe6e3a73478c8464ea1e8efc103899da8e5a86
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add apache-orc....* gnu/packages/databases.scm (apache-orc): New variable.
Change-Id: I9e7df4a03a5d2f258ff44d9705f539f9fc925a99
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pandas-stub: Update to 2.1.1.230928....This is a follow-up to commit ff2d0ecfca87450c82df8d74666261b1c19cbe66.
* gnu/packages/python-science.scm (python-pandas-stub): Update to
2.1.1.230928.
Change-Id: I2e8ce18bd25399b467a6ff2a6fb846f8bb969e4c
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-tabulate: Update to 0.9.0....* gnu/packages/python-xyz.scm (python-tabulate): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
Change-Id: If360e5be6433b35308b76bd1284bb6ddb74008e8
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pandas-2: Fix version....* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Write version
string to "_version.py", not "_version_meson.py" to avoid reporting the
version as "0+unknown".
Change-Id: I1a18814e37c023102714326bc8bd505705234205
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-scikit-learn: Update to 1.4.2....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.4.2.
[native-inputs]: Replace python-cython-0.29.35 with python-cython-3.
Change-Id: Id8be08f931bf250a8ecb8bc46b44d7148b4c4a2f
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-cython-3: Update to 3.0.8....* gnu/packages/python-xyz.scm (python-cython-3): Update to 3.0.8.
Change-Id: I9129a7837cefea0b95b0a3c3cdf73997d91f7484
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pyjanitor: Update to 0.27.0....* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.27.0.
[arguments]: Disable a few more tests; add phase 'pandas-compat.
Change-Id: Ia8891971a687342166f30ded11f9e341a208d95e
| Ricardo Wurmus |
| 2024-05-05 | gnu: tadbit: Use G-expression....* gnu/packages/bioinformatics.scm (tadbit)[arguments]: Use G-expression.
Change-Id: I4fe4afc41eb3442f243b0e415ddcb363be36ce7f
| Ricardo Wurmus |
| 2024-05-05 | gnu: r-reticulate: Update to 1.36.1....* gnu/packages/cran.scm (r-reticulate): Update to 1.36.1.
Change-Id: I7119ca05b8411209c617be318806b3ff4bc3b530
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-xarray: Disable tests that are known to fail....* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two
tests.
Change-Id: I70954173e0aca5a377cf19476e9390a97febadc7
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pandas: Default to version 2.x....* gnu/packages/python-science.scm (python-pandas): Define as alias for
python-pandas-2; rename existing definition to...
(python-pandas-1): ...this new variable.
Change-Id: If359e3b2d42c683d7d0152b1757bbc5a979c999b
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-scikit-opt: Add missing input....* gnu/packages/python-science.scm (python-scikit-opt)[propagated-inputs]: Add
python-pytorch.
Change-Id: I037cc43bedeaebb05bf038c0bca72919f8c27c40
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-plastid: Replace nose with pytest....* gnu/packages/bioinformatics.scm (python-plastid)[native-inputs]: Replace
python-nose with python-pytest.
Change-Id: Ie0e5362d2304d3af0bcb1405fa0c1ad36fb2ace6
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-metacells....* gnu/packages/bioinformatics.scm (python-metacells): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I4fc760dc4317bde79c815f441ad0cc453248990a
| Marco Baggio |
| 2024-05-05 | gnu: Add python-cvxpy....* gnu/packages/python-science.scm (python-cvxpy): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I440ab3768cbc4e78364dc31cf9484effd9670f49
| Marco Baggio |
| 2024-05-05 | gnu: Add python-ecos....* gnu/packages/python-science.scm (python-ecos): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I83d9b746f5f3563f417efc5d18911f2eb04f201c
| Marco Baggio |
| 2024-05-05 | gnu: Add python-osqp....* gnu/packages/python-science.scm (python-osqp): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Id6f1665505469fd6543046636b82d0730b319df3
| Marco Baggio |
| 2024-05-05 | gnu: Add python-qdldl....* gnu/packages/python-science.scm (python-qdldl): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I523ecb2292c9b514b548e2130d0d43bb77317b00
| Marco Baggio |
| 2024-05-05 | gnu: Add python-scs....* gnu/packages/python-science.scm (python-scs): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I6c5ecdac4b558aab4b8ee396dff1dfc9cdec07f0
| Marco Baggio |
| 2024-05-05 | gnu: Add python-fastcluster....* gnu/packages/python-science.scm (python-fastcluster): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Ifc5229a4d00f581eb358a1f41fc3479fd1c33c2e
| Marco Baggio |
| 2024-05-05 | gnu: Add python-clarabel....* gnu/packages/python-science.scm (python-clarabel): New variable.
Change-Id: I28459162460ca9bf9e9557122f611c677afadc27
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add rust-amd-0.2....* gnu/packages/crates-io.scm (rust-amd-0.2): New variable.
Change-Id: I28d4e0d6bd9b590ca61df9152f91641408e48e5a
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-param....* gnu/packages/python-xyz.scm (python-param): New variable.
Change-Id: Idad928488d7c306c969b4484a3cd22661c41d488
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-multiscale-spatial-image....* gnu/packages/python-xyz.scm (python-multiscale-spatial-image): New variable.
Change-Id: I05a0b3a93091148917fade831faefb88c13bbc6f
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-colorcet....* gnu/packages/python-xyz.scm (python-colorcet): New variable.
Change-Id: I8b3f6d9a132d028f56330308b034d263e162f0f9
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-nbmake....* gnu/packages/python-check.scm (python-nbmake): New variable.
Change-Id: If062d0e34329e99b5bb87588e7ddf149c65bfdfb
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-pyct....* gnu/packages/python-xyz.scm (python-pyct): New variable.
Change-Id: Ia207d5aa9d66fd2bf3616049c042fbb12e50928d
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add rust-blas-0.22....* gnu/packages/crates-io.scm (rust-blas-0.22): New variable.
Change-Id: Ic7bcbde20b6552659255f4ff11adde8fb1eeea45
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add rust-blas-sys-0.7....* gnu/packages/crates-io.scm (rust-blas-sys-0.7): New variable.
Change-Id: Ibfa2ab61256527e34e9ff9a8f7d871990ffbeda7
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add rust-lapack-0.19....* gnu/packages/crates-io.scm (rust-lapack-0.19): New variable.
Change-Id: I2c32db5e4028432e030005c7ee16773d0f052d21
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add rust-lapack-sys-0.14....* gnu/packages/crates-io.scm (rust-lapack-sys-0.14): New variable.
Change-Id: Id8fa94a06c231f3864040d2c428ac81042803adf
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-xarray-schema....* gnu/packages/python-science.scm (python-xarray-schema): New variable.
Change-Id: I4ca650f2c2872698fc22392add169f44b9e2e035
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-xarray-datatree: Add missing input....* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]:
Add python-setuptools-scm.
Change-Id: I86a7280ba687385edb15f30dae1a20e3811a0beb
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pooch: Update to 1.8.1....* gnu/packages/python-xyz.scm (python-pooch): Update to 1.8.1.
[arguments]: Enable tests, but not all of them.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools-scm.
[propagated-inputs]: Add python-platformdirs; remove python-appdirs and
python-packaging.
Change-Id: I3a0f73db5c0d78c9cee24c73402e9b1e34e26b4a
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-dask-image....* gnu/packages/python-xyz.scm (python-dask-image): New variable.
Change-Id: I77c22bba69d73ce39681064bfdcc05b2b360ea26
| Ricardo Wurmus |
| 2024-05-05 | gnu: Revmoe go-github-com-syndtr-goleveldb....This package is a duplicate to go-github-com-syndtr-goleveldb-leveldb.
* gnu/packages/ipfs.scm: Revmoe (gnu packages syncthing) module.
(kubo) [inputs]: Replace go-github-com-syndtr-goleveldb with
go-github-com-syndtr-goleveldb-leveldb.
* gnu/packages/syncthing.scm (go-github-com-syndtr-goleveldb): Remove
variable.
Change-Id: I8641a18a3d97f570f3bbbd849f7dabdea4e41b01
| Sharlatan Hellseher |
| 2024-05-05 | gnu: go-go-uber-org-atomic: Update to 1.11.0....The upstream suggested to update to the latest version to resolve
failing tests on RISK-V, see
<https://github.com/uber-go/atomic/issues/164>.
* gnu/packages/golang-xyz.scm (go-go-uber-org-atomic): Update to 1.11.0.
[arguments]: <#:tests?>: Enable tests on all platforms.
Change-Id: I6df21cfaebb9e4d4a609e93f3fe4bfea2bff5e8d
| Sharlatan Hellseher |
