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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
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* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
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* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
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* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
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* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
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* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
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* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
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