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2021-02-01gnu: cuirass: Update to 0.0.1-64.79b77b4....* gnu/packages/ci.scm (cuirass): Update to 0.0.1-64.79b77b4. Mathieu Othacehe
2021-02-01gnu: openbabel: Update to 3.1.1....* gnu/packages/chemistry.scm (openbabel): Update to 3.1.1. [source]: Update URI. [arguments]: Temporarily skip tests on i686-linux. Kei Kebreau
2021-02-01gnu: inchi: Update to 1.06....* gnu/packages/chemistry.scm (inchi): Update to 1.06. [source]: Use HTTPS. [native-inputs]: Update inchi-doc hash. Kei Kebreau
2021-02-01gnu: vcflib: Fix generated pkg-config file....* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom generated pkg-config file, link with all needed libraries and fix linker library. * gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly. Efraim Flashner
2021-02-01news: Add entry for '--export-manifest' and '--export-channels'....* etc/news.scm: Add entry. Ludovic Courtès
2021-02-01gnu: python-attrs: Update to 20.3.0....* gnu/packages/python-xyz.scm (python-attrs): Update to 20.3.0. Maxim Cournoyer
2021-02-01gnu: meson-for-build: Remove package....The meson-for-build package doesn't carry any special patch anymore; it appears to be obsolete. * gnu/packages/build-tools.scm (meson-for-build): Remove variable. * guix/build-system/meson.scm (default-meson): Use meson. * doc/guix.texi (Build Systems): Update doc. Maxim Cournoyer
2021-02-01gnu: mpd: Update comment....* gnu/packages/mpd.scm (mpdris2): Replace mention of PYTHONPATH by GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: ceph: Streamline use of PYTHONPATH....* gnu/packages/storage.scm (ceph) [phases]{set-install-environment}: Just add what's needed to PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: manuskript: Wrap with GUIX_PYTHONPATH....* gnu/packages/text-editors.scm (manuskript): [phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: kaldi-gstreamer-server: Wrap with GUIX_PYTHONPATH....* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): [phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: ganeti: Remove PYTHONPATH-altering patch....* gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Un-register it. * gnu/packages/virtualization.scm (ganeti): Remove patch. Maxim Cournoyer
2021-02-01gnu: seahorse-adventures: Wrap with GUIX_PYTHONPATH....* gnu/packages/games.scm (seahorse-adventures): [phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: roguebox-adventures: Wrap with GUIX_PYTHONPATH....* gnu/packages/games.scm (roguebox-adventures): [phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: avogadro: Wrap with GUIX_PYTHONPATH....* gnu/packages/chemistry.scm (avogadro) [phases]: Delete trailing #t. {wrap-program}: Replace PYTHONPATH with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: freecad: Wrap with GUIX_PYTHONPATH....* gnu/packages/engineering.scm (freecad) [phases]{restore-pythonpath}: Delete phase. {wrap-pythonpath}: Replace PYTHONPATH with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: hplip: Adjust to use GUIX_PYTHONPATH....* gnu/packages/cups.scm (hplip): Delete trailing #t. [phases]{wrap-binaries}: Streamline and use GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-cloudpickle: Do not alter PYTHONPATH....* gnu/packages/python.scm (python-cloudpickle) [phases]{do-not-override-PYTHONPATH}: Delete phase. Remove trailing #t. Maxim Cournoyer
2021-02-01gnu: gnuradio: Use GUIX_PYTHONPATH in search path....* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Use GUIX_PYTHONPATH instead of PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: gajim: Use GUIX_PYTHONPATH in search path....* gnu/packages/messaging.scm (gajim)[native-search-paths]: Use GUIX_PYTHONPATH instead of PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: pypy3: Do not alter PYTHONPATH....* gnu/packages/python.scm (pypy3): Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: assword: Do not alter PYTHONPATH....* gnu/packages/password-utils.scm (assword): Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: gpodder: Do not alter PYTHONPATH....* gnu/packages/gpodder.scm (gpodder): Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: enjarify: Do not alter PYTHONPATH....* gnu/packages/android.scm (enjarify): Do not alter PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: Adjust package collection to Wrap using GUIX_PYTHONPATH....This change was automated using: $ git ls-files | grep .scm | \ xargs sed 's/(getenv "PYTHONPATH")/(getenv "GUIX_PYTHONPATH")/' -i $ git ls-files | grep .scm | \ xargs sed 's/`("PYTHONPATH"/`("GUIX_PYTHONPATH"/' -i * gnu/packages/admin.scm (nmap): (dstat): Wrap using GUIX_PYTHONPATH. * gnu/packages/audio.scm (jack-2): (carla): Likewise. * gnu/packages/benchmark.scm (fio): Likewise. * gnu/packages/bioinformatics.scm (couger): Likewise. (gess, find-circ, filtlong, nanopolish): Likewise. * gnu/packages/cdrom.scm (cdemu-client): Likewise. * gnu/packages/chemistry.scm (avogadro): Likewise. * gnu/packages/connman.scm (econnman): Likewise. * gnu/packages/cups.scm (hplip): Likewise. * gnu/packages/debug.scm (scanmem): Likewise. * gnu/packages/display-managers.scm (lightdm): Likewise. * gnu/packages/ebook.scm (cozy): Likewise. * gnu/packages/education.scm (anki): Likewise. * gnu/packages/engineering.scm (kicad, volk, freecad): Likewise. * gnu/packages/game-development.scm (renpy): Likewise. * gnu/packages/games.scm (roguebox-adventures) (seahorse-adventures, kajongg): Likewise. * gnu/packages/gimp.scm (gimp, glimpse): Likewise. * gnu/packages/glib.scm (itstool): Likewise. * gnu/packages/gnome.scm (gnome-music, gtg, rhythmbox): Likewise. (eolie, d-feet, gedit, caribou, gnome-shell, authenticator) (gnome-todo, orca, passwordsafe, terminator, setzer) (libratbag, komikku): Likewise. * gnu/packages/gps.scm (gpsd): Likewise. * gnu/packages/gtk.scm (gtk-doc): Likewise. * gnu/packages/ibus.scm (ibus, ibus-libpinyin, ibus-anthy) (ibus-libhangul): Likewise. * gnu/packages/inkscape.scm (inkscape-1.0): Likewise. * gnu/packages/linux.scm (bcc): Likewise. * gnu/packages/mail.scm (notifymuch): Likewise. * gnu/packages/maths.scm (units): Likewise. * gnu/packages/music.scm (solfege): Likewise. * gnu/packages/networking.scm (blueman): Likewise. * gnu/packages/patchutils.scm (patchwork): Likewise. * gnu/packages/photo.scm (rapid-photo-downloader, entangle): Likewise. * gnu/packages/plotutils.scm (asymptote): Likewise. * gnu/packages/presentation.scm (presentty): Likewise. * gnu/packages/screen.scm (byobu): Likewise. * gnu/packages/storage.scm (ceph): Likewise. * gnu/packages/syndication.scm (liferea): Likewise. * gnu/packages/task-management.scm (blanket): Likewise. * gnu/packages/text-editors.scm (manuskript): Likewise. * gnu/packages/version-control.scm (gitless, cgit, git-when-merged) (git-imerge): Likewise. * gnu/packages/video.scm (pitivi): Likewise. * gnu/packages/virtualization.scm (criu): Likewise. * gnu/packages/xfce.scm (catfish): Likewise. Maxim Cournoyer
2021-02-01gnu: redshift: Wrap with GUIX_PYTHONPATH....* gnu/packages/xdisorg.scm (redshift): Streamline wrap phase and Wrap with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: 389-ds-base: Wrap with GUIX_PYTHONPATH....* gnu/packages/openldap.scm (389-ds-base): Remove trailing #t. Do not alter PYTHONPATH. Wrap with GUIX_PYTHONPATH. Maxim Cournoyer
2021-02-01doc: Update references to PYTHONPATH and some examples....The PYTHONPATH variable is replaced by GUIX_PYTHONPATH. Refresh the packages used or shown in some of the examples. Maxim Cournoyer
2021-02-01gnu: python-gunicorn: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-gunicorn) [phases]: Delete trailing #t. {check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-webassets: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-webassets) [phases]: Delete trailing #t. {check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-flask-wtf: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-flask-wtf) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-flask: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-flask) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-databricks-cli: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-databricks-cli) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-jsonpickle: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-jsonpickle) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-cfn-lint: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-cfn-lint) [phases]{check}: Do not set PATH nor PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-aws-xray-sdk: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-aws-xray-sdk) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-asgiref: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-asgiref) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-aiohttp: Do not set PYTHONPATH....* gnu/packages/python-web.scm (python-aiohttp) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python2-send2trash: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python2-send2trash): Do not override the arguments field. Maxim Cournoyer
2021-02-01gnu: python-flasgger: Do not set PYTHONPATH....* gnu/packages/python-check.scm (python-flasgger) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-apispec: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-apispec) {disable-prance-tests}: Remove phase. [phases]{check}: Do not set PYTHONPATH. Exclude the tests using the CLI of Pytest. Maxim Cournoyer
2021-02-01gnu: python-rfc3986: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-rfc3986) [arguments]: Remove the '#:modules' argument. [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-pbkdf2: Do not set PYTHONPATH....* gnu/packages/python-check.scm (python-pbkdf2) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-cheetah: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-cheetah) [arguments]: Remove the '#:modules' argument. [phases]: Delete trailing #t. {check}: Do not set PATH nor PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-pyelftools: Do not set PYTHONPATH....* gnu/packages/protobuf.scm (python-pyelftools) [phases]{set-pythonpath}: Delete phase. Maxim Cournoyer
2021-02-01gnu: python-validictory: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-validictory) [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-natsort: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-natsort) [arguments]: Remove the '#:modules' argument. [phases]{check}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-odfpy: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-odfpy) [phases]{generate-test-data}: Do not set PYTHONPATH. Maxim Cournoyer
2021-02-01gnu: python-binwalk: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-binwalk) [phases]{set-pythonpath}: Rename to... {set-home}: ... here. Do not set PYTHONPATH. Delete trailing #t. Maxim Cournoyer
2021-02-01gnu: python-libcst: Do not set PYTHONPATH....* gnu/packages/python-xyz.scm (python-libcst) [phases]{generate-test-data}: Do not set PYTHONPATH. Maxim Cournoyer