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2016-08-04gnu: curl: Replace with 7.50.1 [fixes CVE-2016-{3739,4802,5419,5420,5421].Leo Famulari
* gnu/packages/curl.scm (curl)[replacement]: New field. (curl-7.50.1): New variable.
2016-08-04gnu: zsh: Move to shells.scm.Tobias Geerinckx-Rice
* gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm.
2016-08-04Update NEWS.Ludovic Courtès
2016-08-04Merge branch 'core-updates'Mark H Weaver
2016-08-04Revert "Merge branch 'core-updates'"Mark H Weaver
This reverts commit 455859a50f88f625d13fc2f304111f02369b366b.
2016-08-04Revert "gnu: zsh: Move to shells.scm."Mark H Weaver
This reverts commit 12b63ab505f781e49b6e7dda2d9eca0aaf24eaf1.
2016-08-04Revert "Update NEWS."Mark H Weaver
This reverts commit 66edac525b7bb8ba29362c887450ff38c54da08d.
2016-08-04gnu: python-statsmodels: Fix tests.Ricardo Wurmus
* gnu/packages/statistics.scm (python-statsmodels): Add patch to fix tests. (python2-statsmodels)[propagated-inputs]: Add python2-pytz. * gnu/packages/patches/python-statsmodels-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-08-04gnu: gtk-doc: Disable parallel tests.Andreas Enge
* gnu/packages/gtk.scm (gtk-doc)[arguments]: Disable parallel tests.
2016-08-04gnu: gtk-doc: Update to 1.25.Andreas Enge
* gnu/packages/gtk.scm (gtk-doc): Update to 1.25.
2016-08-04gnu: python2-bz2file: Use python-2.Ben Woodcroft
This is a followup to 124df723a0150e968910e34d5e94023b18901d0c. Problem reported by Andreas Enge <andreas@enge.fr>. * gnu/packages/python.scm (python2-bz2file)[arguments]: Use python-2.
2016-08-04gnu: qt: Update to 5.6.1-1.Andreas Enge
* gnu/packages/qt.scm (qt): Update to 5.6.1-1. Co-authored-by: David Craven <david@craven.ch>
2016-08-04gnu: qt: Use modify-phases syntax.Andreas Enge
* gnu/packages/qt.scm (qt): Use modify-phases syntax.
2016-08-04gnu: qtbase: Modify .cmake files to enable modules in different packages.Andreas Enge
* gnu/packages/qt.scm (qtbase)[arguments]: In the configure phase, modify .cmake and .cmake.in files so that find_package honors CMAKE_PREFIX_PATH.
2016-08-03gnu: Add GCompris.Ricardo Wurmus
* gnu/packages/education.scm (gcompris): New variable.
2016-08-03Merge branch 'version-0.11.0'Ludovic Courtès
2016-08-03gnu: Add discrover.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (discrover): New variable.
2016-08-03Rename references to (gnu packages tcsh).ng0
* gnu/packages/algebra.scm, gnu/packages/boost.scm, gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm: Change broken references to module (gnu packages tcsh) to (gnu packages shells).
2016-08-03doc: Fix typos.Ludovic Courtès
* doc/guix.texi (Application Setup): Use @xref, not @pxref, when starting a sentence. (Scheduled Job Execution): Remove extra indent in example; fix typos.
2016-08-03doc: Update Texinfo HTML cross-reference file..Ludovic Courtès
* doc/htmlxref.cnf: Add entries for 'find' and 'mcron'.
2016-08-03gnu: fxtract: Restrict to x86_64-linux.Ben Woodcroft
* gnu/packages/bioinformatics.scm (fxtract)[supported-systems]: Restrict to x86_64-linux.
2016-08-03gnu: python-bz2file: Disable tests.Ben Woodcroft
* gnu/packages/python.scm (python-bz2file)[arguments]: Disable tests. (python2-bz2file)[arguments]: New field.
2016-08-03gnu: mdadm: Build without '-Werror'Ludovic Courtès
* gnu/packages/linux.scm (mdadm)[arguments]: Add 'remove-W-error' phase.
2016-08-03gnu: guix: Update development snapshot.Ludovic Courtès
* gnu/packages/package-management.scm (guix-devel): Update to 4420940. (guix): Set to GUIX-DEVEL.
2016-08-03gnu: zsh: Move to shells.scm.Tobias Geerinckx-Rice
* gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm.
2016-08-03gnu: tcsh: Move to shells.scm.Tobias Geerinckx-Rice
* gnu/packages/tcsh.scm (tcsh): Move from here ... * gnu/packages/shells.scm (tcsh): ... to here. * gnu/packages/tcsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove tcsh.scm.
2016-08-03gnu: rc: Move to shells.scm.Tobias Geerinckx-Rice
* gnu/packages/rc.scm (rc): Move from here ... * gnu/packages/shells.scm (rc): ... to here. * gnu/packages/rc.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove rc.scm.
2016-08-03gnu: fish: Move to shells.scm.Tobias Geerinckx-Rice
* gnu/packages/fish.scm (fish): Move from here ... * gnu/packages/shells.scm (fish): ... to here. * gnu/packages/fish.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove fish.scm.
2016-08-03gnu: Add dash.Tobias Geerinckx-Rice
* gnu/packages/shells.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2016-08-03gnu: guix: Update to 0.11.0.Ludovic Courtès
* gnu/packages/package-management.scm (guix-0.10.0): Rename to... (guix-0.11.0): ... this. Adjust users. (guix): Set to GUIX-0.11.0.
2016-08-03Update NEWS.Ludovic Courtès
2016-08-03mapped-devices: raid-device-mapping: Avoid non-top-level 'use-modules'.Ludovic Courtès
Fixes <http://bugs.gnu.org/24135>. Reported by myglc2 <myglc2@gmail.com>. * gnu/system/mapped-devices.scm (open-raid-device): Avoid non-top-level 'use-modules' form.
2016-08-02guix system: Fix the Shepherd error handling fix.Ludovic Courtès
This is a followup to aa1e73a996ad170fecac848f203528aeb3d2173e. * guix/scripts/system.scm (with-shepherd-error-handling): Return two values when an exception is caught.
2016-08-02build: Add missing procps patch to the distribution.Ludovic Courtès
The patch was added to gnu/local.mk in d46123aade7bc5226004eb46ee1084dc84f2b30a and inadvertently removed in a subsequent merge. * gnu/local.mk (dist_patch_DATA): Add procps-non-linux.patch.
2016-08-02guix system: Properly report Shepherd errors when upgrading services.Ludovic Courtès
Fixes regression introduced in 8bf92e3904cb656d4c2160fc8befebaf21a65492. Reported by myglc2 <myglc2@gmail.com> in <http://bugs.gnu.org/24135>. * guix/scripts/system.scm (with-shepherd-error-handling): Rename 'body' to 'mbody'. Expand to a monadic procedure that runs MBODY.
2016-08-02doc: Clarify distinction between "service" and "Shepherd service".Ludovic Courtès
* doc/guix.texi (Services): Distinguish "service" and "Shepherd service". Add xref to "Shepherd Services".
2016-08-02doc: Fix typo.Ludovic Courtès
* doc/guix.texi (Locales): Add missing 'of'.
2016-08-02gnu: python-atomicwrites: Update to 1.1.0.Leo Famulari
* gnu/packages/python.scm (python-atomicwrites, python2-atomicwrites): Update to 1.1.0.
2016-08-02gnu: Add Seren.Francesco Frassinelli
* gnu/packages/telephony.scm (seren): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-02gnu: Add Elixir.Pjotr Prins
* gnu/packages/elixir.scm: New file. * gnu/packages/patches/elixir-disable-failing-tests.patch: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add module. (dist_patch_DATA): Add patch. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-08-02gnu: libressl: Update to 2.4.2.Leo Famulari
* gnu/packages/tls.scm (libressl): Update to 2.4.2.
2016-08-02system: Define 'GUIX_LOCPATH' to work around 'glibc' package defect.Ludovic Courtès
Our 'glibc' package currently ignores /run/current-system/locale, although the intent is to look for locales in that directory. * gnu/packages/base.scm (glibc/linux): Add comment about /run/current-system/locale being ignored. * gnu/system.scm (operating-system-environment-variables): Add 'GUIX_LOCPATH'. * gnu/tests/base.scm (run-basic-test): Add "locale" test.
2016-08-02tests: Make sure threads use separate output ports.Ludovic Courtès
* tests/publish.scm (with-separate-output-ports): New macro. <top level>: Use it when spawning new thread. ("/*.narinfo with compression"): Likewise.
2016-08-02tests: Work around Guile bug with unbuffered custom binary input ports.Ludovic Courtès
Reported by Chris Marusich <cmmarusich@gmail.com> at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=24060#19> * tests/publish.scm (http-get-port): Remove 'setvbuf' call for the response port.
2016-08-02gnu: Add perl-log-any-adapter-log4perl.Alex Sassmannshausen
* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): New variable.
2016-08-02gnu: Add perl-log-log4perl.Alex Sassmannshausen
* gnu/packages/perl.scm (perl-log-log4perl): New variable.
2016-08-02gnu: Add perl-log-any.Alex Sassmannshausen
* gnu/packages/perl.scm (perl-log-any): New variable.
2016-08-02gnu: Add emacs-visual-fill-column.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-visual-fill-column): New variable.
2016-08-02gnu: ccl: Update to 1.11.Christopher W. Carpenter
* gnu/packages/lisp.scm (ccl): Update to 1.11. Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-08-02gnu: r-variantannotation: Update to 1.18.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.6.
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