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2017-11-30gnu: fish-guix: Update to 0.1.2.1.ng0
* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1. (license): Switch to bsd-3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30vm: Filter out file systems that refer to UUIDs or labels.Ludovic Courtès
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]: Filter out things that refer to file system UUIDs or labels.
2017-11-30gnu: monero-core: Fix missing dependency.Vasile Dumitrascu
* gnu/packages/finance.scm (monero-core)[inputs]: Add readline. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30gnu: Add xautolock.Mike Gerwitz
* gnu/packages/xdisorg.scm (xautolock): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30ui: Present 'use-modules' hints with a question mark.Ludovic Courtès
Suggested by myglc2 <myglc2@gmail.com>. * guix/ui.scm (report-load-error): Write "Did you forget" rather than "Try adding."
2017-11-30gnu: jellyfish: Update to 2.2.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7. [native-inputs]: Add pkg-config. [inputs]: Add htslib.
2017-11-30gnu: r-bigmemory: Update to 4.5.31.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31. [propagated-inputs]: Remove r-r-utils.
2017-11-30gnu: r-cowplot: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1. [propagated-inputs]: Add r-scales.
2017-11-30gnu: r-rcppprogress: Update to 0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4. [propagated-inputs]: Add r-devtools.
2017-11-30gnu: r-rmarkdown: Update to 1.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8. [propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30gnu: r-batchjobs: Update to 1.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7. [propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove r-fail and r-stringr.
2017-11-30gnu: r-pracma: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30gnu: r-annotationhub: Update to 2.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
2017-11-30gnu: r-msnid: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
2017-11-30gnu: r-maldiquant: Update to 1.17.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
2017-11-30gnu: r-genomicalignments: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
2017-11-30gnu: r-limma: Update to 3.34.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
2017-11-30gnu: r-variantannotation: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
2017-11-30gnu: r-getopt: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
2017-11-30gnu: r-gseabase: Update to 1.40.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
2017-11-30gnu: r-dexseq: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
2017-11-30gnu: r-deseq2: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
2017-11-30gnu: r-annotate: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
2017-11-30gnu: r-circlize: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
2017-11-30gnu: r-rcpp: Update to 0.12.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
2017-11-30gnu: r-timedate: Update to 3042.101.Ricardo Wurmus
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
2017-11-30gnu: r-stringi: Update to 1.1.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30gnu: r-devtools: Update to 1.13.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30gnu: r-mclust: Update to 5.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30gnu: r-rcppeigen: Update to 0.3.3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30gnu: r-car: Update to 2.1-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30gnu: r-sn: Update to 1.5-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30gnu: r-openssl: Update to 0.9.9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30gnu: r-hms: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0. [propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30gnu: r-dendextend: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
2017-11-30gnu: r-recipes: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1. [propagated-inputs]: Add r-broom and r-matrix.
2017-11-30gnu: Add r-broom.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): New variable.
2017-11-30gnu: Add r-psych.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): New variable.
2017-11-30gnu: mongodb: Use scons-build-system.Arun Isaac
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-30gnu: klick: Use scons-build-system.Arun Isaac
* gnu/packages/music.scm (klick): Switch to scons-build-system.
2017-11-30gnu: pingus: Use scons-build-system.Arun Isaac
* gnu/packages/games.scm (pingus): Switch to scons-build-system.
2017-11-30gnu: godot: Use scons-build-system.Arun Isaac
* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
2017-11-30gnu: metabat: Use scons-build-system.Arun Isaac
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
2017-11-30gnu: serf: Use scons-build-system.Arun Isaac
* gnu/packages/web.scm (serf): Switch to scons-build-system.
2017-11-30gnu: gpick: Use scons-build-system.Arun Isaac
* gnu/packages/image.scm (gpick): Switch to scons-build-system.
2017-11-30gnu: linuxdcpp: Use scons-build-system.Arun Isaac
* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
2017-11-30build-system: Add scons-build-system.Arun Isaac
* guix/build-system/scons.scm: New file. * guix/build/scons-build-system.scm: New file. * Makefile.am (MODULES): Register them. * doc/guix.texi (Build Systems): Add scons-build-system.
2017-11-30gnu: scons: Update to 3.0.1.Arun Isaac
* gnu/packages/python.scm (scons): Update to 3.0.1. (scons-python2): New variable.
2017-11-30gnu: dtc: Fix build on 32 bits platforms.Mathieu Othacehe
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and dtc-format-modifier.patch to fix build and tests on 32 bits platforms. * gnu/packages/patches/dtc-32-bits-check.patch : New file. * gnu/packages/patches/dtc-format-modifier.patch : New file. * gnu/local.mk (dist_patch_DATA): Add two above patches.
2017-11-30gnu: Update r-matrix to 1.2-12.Roel Janssen
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
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