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2023-12-15gnu: r-htmlwidgets: Update to 1.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.4. Change-Id: I0bfc9559f93d97acb6d609d57c82bd7bc8127253
2023-12-15gnu: r-jsonlite: Update to 1.8.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.8. Change-Id: I1604ece653980c17eef6cca6c1895bc2b4f3e2ec
2023-12-15gnu: r-httpuv: Update to 1.6.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.13. Change-Id: I5e1269f481de948de0ec589975a15455d326e491
2023-12-15gnu: r-morpho: Update to 2.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-morpho): Update to 2.12. Change-Id: I7a1b3740db151be1526ef1ba4181721dd54c286b
2023-12-15gnu: r-tgstat: Update to 2.3.25.Ricardo Wurmus
* gnu/packages/cran.scm (r-tgstat): Update to 2.3.25. Change-Id: Ic9d0eed09874eacc2f1d8e7409621231b43b801f
2023-12-15gnu: r-tgp: Update to 2.4-22.Ricardo Wurmus
* gnu/packages/cran.scm (r-tgp): Update to 2.4-22. Change-Id: I65274aa057b93fc8e98108953f8b7b3ee5f6a15d
2023-12-15gnu: r-mboost: Update to 2.9-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-mboost): Update to 2.9-9. Change-Id: Iae55fc9098627dd465cc0ee01e6b280c9239d5d1
2023-12-15gnu: r-philentropy: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-philentropy): Update to 0.8.0. Change-Id: I961746348d6d1683937f164feaa4ea943ca970db
2023-12-15gnu: r-ggside: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggside): Update to 0.2.3. [propagated-inputs]: Add r-cli. Change-Id: Ifa75fca71615b3b31152b3ff27c20a759b9480fe
2023-12-15gnu: r-ggpmisc: Update to 0.5.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.5. Change-Id: Ib25b40f4dd7e1ae5b5d417658246b80d0452de57
2023-12-15gnu: r-zcompositions: Update to 1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-zcompositions): Update to 1.5. Change-Id: I176c60d21e091b12ca1592673c9869de9c360c7f
2023-12-15gnu: r-v8: Update to 4.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.4.1. Change-Id: I326dd72db909935820e345e2f881994c55443c7e
2023-12-15gnu: r-ggdist: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggdist): Update to 3.3.1. [propagated-inputs]: Add r-rcpp. Change-Id: Ie60c46e98a2b5305d373b5a21df0625fe7b5d6c0
2023-12-15gnu: r-dbscan: Update to 1.1-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-dbscan): Update to 1.1-12. Change-Id: If28f2657e8de4a5d893bb74f4559d17249acf714
2023-12-15gnu: r-collapse: Update to 2.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-collapse): Update to 2.0.7. Change-Id: I46c2863921b7d11b0e7fc3a682ea238962fcc9c4
2023-12-15gnu: r-brio: Update to 1.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-brio): Update to 1.1.4. Change-Id: I5dfce63a5686b1e0bf66c42c476ff9b04b0a828d
2023-12-15gnu: r-abn: Update to 3.0.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.4. Change-Id: I15970d14205b32f254ecf2c5207e98d7289ac281
2023-12-15gnu: r-fhtest: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fhtest): Update to 1.5.1. Change-Id: I08513b08ee2fc72ab00b372a013dbfa6ed064fc1
2023-12-15gnu: r-biomartr: Update to 1.0.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.7. Change-Id: I7f02a92d86506b4fbca950a13ed106753e1b7f76
2023-12-15gnu: r-arrow: Update to 14.0.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 14.0.0.2. Change-Id: Icff453a1aa0ad59d7e707a0fdfc23e3d4dd1f7c0
2023-12-15gnu: apache-arrow: Update to 14.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 14.0.0. Change-Id: I5689b37fbfee2cb049cbaf351caed2e3cd07094c
2023-12-15gnu: r-interactivedisplay: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactivedisplay)[propagated-inputs]: Add r-biocmanager. Change-Id: I7e29c28202496ba58ec35adf03b77ac84691e492
2023-12-15gnu: r-dt: Update to 0.31.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.31. [source]: Simplify by using git repositories for extensions instead of fetching every file from the datatables CDN. [native-inputs]: Update to datatables-plugins 1.13.6. Change-Id: Ibebd2ae1f3b4d51739b756ad808bebf2663e1009
2023-12-15gnu: r-interactivedisplay: Add missing JavaScript sources.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactivedisplay)[source]: Update list of minified JavaScript files to delete. [arguments]: Use minify-build-system to process JavaScript files. [native-inputs]: Add js-d3-v2; relabel js-datatables as js-datatables-1.10; add js-datatables-1.9. Change-Id: If8b6d9378680e9f69d71be56ce28add70b1a4564
2023-12-15gnu: r-bookdown: Update to 0.37.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.37. [arguments]: Use minify-build-system to process JavaScript. Change-Id: I53ff5ef1527976e40e7caf8b34f77af7eb3e833f
2023-12-15gnu: r-crosstalk: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-crosstalk): Update to 1.2.1. [source]: Add snippet to delete bundled minified JavaScript. [arguments]: Use minify-build-system to minify JavaScript files from source; add phase 'replace-bundled-minified-JavaScript. [native-inputs]: Add esbuild and js-selectize. Change-Id: I2a4a773d5f40a8f27e594e2f1b627624cab8755e
2023-12-15gnu: Add js-datatables-1.9.Ricardo Wurmus
* gnu/packages/javascript.scm (js-datatables-1.9): New variable. Change-Id: I9b022e12119247c8385ebbcec07f54c4106155df
2023-12-15gnu: r-bslib: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bslib): Update to 0.6.1. [source]: Update list of minified JavaScript to delete. [arguments]: Use minify-build-system; update process-javascript phase. [propagated-inputs]: Add r-lifecycle. [native-inputs]: Remove typescript-components; update js-bootstrap5-bundle. Change-Id: I0aeae3f11a35211e6b429461042dbce2eca85313
2023-12-15gnu: r-pkgbuild: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.3. [propagated-inputs]: Remove r-crayon, r-prettyunits, and r-rprojroot. Change-Id: I0b83188e69aae19ddc62d71da18358777ed9c454
2023-12-15gnu: r-wgcna: Update to 1.72-5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.72-5. Change-Id: Ib9d3b0e6ba191839e4b22cb0b8f63e6b0e9d2baa
2023-12-15gnu: r-spacetime: Update to 1.3-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spacetime): Update to 1.3-1. Change-Id: I1fe54f97452c0dd738c6cfced56c406498de73c4
2023-12-15gnu: r-openmx: Update to 2.21.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-openmx): Update to 2.21.11. Change-Id: I1349e0965508f42d183d2e705c356fdd3ac9faf0
2023-12-15gnu: r-spacyr: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spacyr): Update to 1.3.0. [native-inputs]: Add r-r-rsp. Change-Id: I999db8ad92b2d0799ffa4350847980db30c75409
2023-12-15gnu: r-scales: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-scales): Update to 1.3.0. [propagated-inputs]: Add r-cli and r-glue. Change-Id: I37c4a09d6910f9d8885d253547808d3dc2761748
2023-12-15gnu: r-pbdmpi: Update to 0.5-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pbdmpi): Update to 0.5-1. Change-Id: Iede248c40a0a57bc5a23015745f426cd4485b38c
2023-12-15gnu: r-rjava: Update to 1.0-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 1.0-10. [source]: Delete bundled minified JavaScript. [arguments]: Use minify-build-system in new phase 'replace-bundled-minified-JavaScript. [native-inputs]: Add esbuild. Change-Id: I6ca7724ea61f53995067cca8d6835fe061621567
2023-12-15gnu: Add alsa-scarlett-gui.Ricardo Wurmus
* gnu/packages/music.scm (alsa-scarlett-gui): New variable. Change-Id: Ia92a0be7e0f08cf42bc263f2c321b4617fa6935b
2023-12-15gnu: tascam-gtk: Update to 0.4-0.69fb86f.Ricardo Wurmus
* gnu/packages/music.scm (tascam-gtk): Update to 0.4-0.69fb86f. [inputs]: Replace libxml++-2 with libxml++-3. Change-Id: Iae8ff22ee7ee5888ff4d24209f2f09fbecf52889
2023-12-15gnu: Add libxml++-3.Ricardo Wurmus
* gnu/packages/gnome.scm (libxml++-3): New variable. Change-Id: I2250766126f433b3f5dcc50cd7eaadec3acadad3
2023-12-15gnu: dezyne: Update to 2.18.0.Janneke Nieuwenhuizen
* gnu/packages/dezyne.scm (dezyne): Update to 2.18.0. [inputs]: Add boost. [arguments]: Change assoc-ref memes to use gexps. Change-Id: I1212de52db6c2b07122e756c68597b1f8ddbb313
2023-12-15gnu: Add scmackerel.Janneke Nieuwenhuizen
* gnu/packages/dezyne.scm (scmackerel): New variable.
2023-12-14services: Add rspamd-service-type.Thomas Ieong
* gnu/services/mail.scm (rspamd-service-type): New variable. * gnu/tests/mail.scm (%test-rspamd): New variable. * doc/guix.texi: Document it. Co-authored-by: Saku Laesvuori <saku@laesvuori.fi> Change-Id: I7196643f087ffe9fc91aab231b69d5ed8dc9d198 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-14gnu: pypy: Update to 7.3.13.Greg Hogan
The validate-runpath error was previously reported in #57653. Version update fixes the existing build errors. * gnu/packages/python.scm (pypy3): Update to 7.3.13. [source]: Update origin URI. [arguments]<#:validate-runpath>: Disable check. [arguments]<#:phases>: Update directory paths. Change-Id: Ic6ab7dd77e30fa85d6fa5f000f9aa2528951b81e Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-12-14services: hpcguix-web: Add ‘configuration’ action.Ludovic Courtès
* gnu/services/web.scm (hpcguix-web-shepherd-service): Define ‘config-file’ and use it. Add ‘actions’ field. Change-Id: I085df403270039ede3c13f21a5d60682c7510e2e
2023-12-14tests: childhurd: Prefer “-cpu max” over “-cpu host”.Ludovic Courtès
“-cpu host” can sometimes, for unclear reasons, lead to this error from QEMU 8.1.1: qemu-system-x86_64: CPU model 'host' requires KVM or HVF This commit fixes it. Inspired by <https://github.com/matthewbauer/nixpkgs/commit/47b56e7c19c2e3af685ee408f02f232efb3d12b1>. * gnu/tests/virtualization.scm (run-childhurd-test)[test]: Prefer “-cpu max” over “-cpu host”. Change-Id: I11a8a68bb0532fe1f3fd2c34b4a7a5fdb7bccb57
2023-12-14services: guix: Allow gexps evaluating to a list of build-machines.Saku Laesvuori
* gnu/services/base.scm (guix-machines-files-installation): Handle machines being a mixed list of build-machines and lists of build-machines. * doc/guix.texi (Base Services): Document it. Change-Id: Ie404562ca0b564413233c3a624046da831893dc3 Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-12-14gnu: libtorrent-rasterbar: Disable test_ssl test.Tomas Volf
It times out in the ci.guix.gnu.org, so this commit disables it. It will be re-enabled once solution is found. * gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]<#:phases>['check]: Disable test_ssl test. Change-Id: Ib396fd8a1786e14baad72ae892bdd0fd3fe7a180 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-14build-system/zig: Do not import (guix build syscalls).Ludovic Courtès
* guix/build-system/zig.scm (%zig-build-system-modules): Remove (guix build syscalls), which is unused. Change-Id: Ie91c46c68787e0a8ffa3cbde2c5fd2294b82ed15
2023-12-14gnu: txr: Remove obsolete fix.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr)[arguments]: Remove 'inhibit-doc-syms-generation' phase. Change-Id: Ibf29e28a82f1821cefbdc87e8bfdf3ffcd4219e5
2023-12-13gnu: xorg-server: Update to 21.1.10 [security fixes].John Kehayias
Fixes CVE-2023-6377 and CVE-2023-6478. See the X.Org security advisory at <https://lists.x.org/archives/xorg-announce/2023-December/003435.html> for details. * gnu/packages/xorg.scm (xorg-server): Update to 21.1.10. Change-Id: I20ecf1a2b9fc15cafc1c57e0fa726c7cf3096a78
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