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2020-04-17gnu: Add python-hicmatrix....* gnu/packages/bioinformatics.scm (python-hicmatrix): New variable. Ricardo Wurmus
2020-04-17gnu: python-cooler: Update to 0.8.7....* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7. [propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and python-simplejson. [native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add python-pytest. Ricardo Wurmus
2020-04-17gnu: python-pybigwig: Update to 0.3.17....* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17. Ricardo Wurmus
2020-04-17gnu: python-tables: Update to 3.6.1....* gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1. [arguments]: Adjust use-gcc phase. Ricardo Wurmus
2020-04-17gnu: python-podcastparser: Run tests....* gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add python-coverage. [arguments]: Replace 'check phase and invoke "nosetests". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pierre Langlois
2020-04-17gnu: gpodder: Run tests....* gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and python-minimock. [arguments]: Replace the 'check phase and invoke "make unittest". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pierre Langlois
2020-04-17gnu: gpodder: Update to 3.10.15....* gnu/packages/gpodder.scm (gpodder): Update to 3.10.15. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pierre Langlois
2020-04-17maint: Build binary tarball without '-K'....This is a followup to 8b292ffd3cd969286ee9cbdb70fde8cf384b9b8b. * Makefile.am (guix-binary.%.tar.xz): Remove '-K' to allow for offloading. Ludovic Courtès
2020-04-17doc: Replace incorrect uses of @var with @code....@var is for meta-syntactic variables but it is used in some places for mere variables, which is incorrect and leads to inconsistent layout in PDF and HTML. * doc/guix.texi (package Reference, The Store Monad) (G-Expressions, operating-system Reference) (File Systems, Base Services, Log Rotation) (Networking Services, Invoking guix deploy): Replace incorrect uses of @var with @code. Ludovic Courtès
2020-04-17gnu: dovecot: Add libunwind input for arm....* gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Pierre Langlois
2020-04-17gnu: khard: Move propagated-inputs to inputs....As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python packages ... [inputs]: ... to here. Efraim Flashner
2020-04-17gnu: khal: Move propagated inputs to inputs....As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python packages... [inputs]: ... to here. Efraim Flashner
2020-04-17gnu: khal: Fix build with python-urwid-2.1.0....* gnu/packages/calendar.scm (khal)[source]: Download upstream patch to fix compatibility with newer python-urwid. Efraim Flashner
2020-04-17gnu: diffoscope.scm: Add missing import....This follows on from 2d9886f7e8838d6aeb0cfb20a2a49fc7d8fb233c. * gnu/packages/diffoscope.scm: Import (gnu packages maths). Christopher Baines
2020-04-16gnu: diffoscope: Update to 141....* gnu/packages/diffoscope (diffoscope): Update to 141. [arguments]: Add phase add-known-tools. [native-inputs]: Add hdf5. Vagrant Cascadian
2020-04-16gnu: disorderfs: Update to 0.5.9....* gnu/packages/file-systems (disorderfs): Update to 0.5.9. Vagrant Cascadian
2020-04-17gnu: python-jedi: Fix test failure on some file systems....Reported by sirgazil on #guix. * gnu/packages/patches/python-jedi-sort-project-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it. [arguments]: Run tests more verbosely while at it. Marius Bakke
2020-04-16gnu: xournalpp: Remove outdated comments....* gnu/packages/pdf.scm (xournalpp): Remove outdated comments. This is a followup to 9cb2f28c5a737576ec28099d69aa35ff687e7778. Nicolas Goaziou
2020-04-16doc: Document building and installing from JSON files....* doc/guix.texi (Invoking guix package): Augment pargraphs for "--install-from-file". (Invoking guix build): Document building from JSON files. * doc/package-hello.json: New file. * doc/local.mk (EXTRA_DIST): Add it. Ricardo Wurmus
2020-04-16import/print: Don't factorize URI if there's no version match....* guix/import/print.scm (package->code): If FACTORIZE-URI returns just the unmodified string use that as the URI. Ricardo Wurmus
2020-04-16import/utils: alist->package: Include arguments....* guix/import/utils.scm (alist->package): Process arguments field in input data and include it in the generated package. Ricardo Wurmus
2020-04-16import/json: json->code: Handle files with more than one definition....* guix/import/json.scm (json->code): Convert JSON arrays to lists of package definitions. (json->scheme-file): Write all expressions to the target file. Ricardo Wurmus
2020-04-16import/utils: alist->package: Ignore known inputs....* guix/import/utils.scm (alist->package): Accept optional list of known inputs, which are excluded from the specification lookup. * guix/import/print.scm (package->code)[package-lists->code]: Handle inputs which are just symbols. Ricardo Wurmus
2020-04-16import/print: package->code: Wrap S-expression in definition....* guix/import/print.scm (package->code): Return a definition, not just a package expression. Ricardo Wurmus
2020-04-16import/json: Use json->code....* guix/import/json.scm (json->code): Export procedure. * guix/scripts/import/json.scm (guix-import-json): Use json->code. Ricardo Wurmus
2020-04-16scripts/package: Handle JSON files....* guix/scripts/package.scm (%options): Support loading from JSON files when "install-from-file" is used. Ricardo Wurmus
2020-04-16scripts/build: options->things-to-build: Handle .json files....* guix/scripts/build.scm (options->things-to-build): Handle files that end on .json. Ricardo Wurmus
2020-04-16import/json: Add json->scheme-file....* guix/import/json.scm (json->code, json->scheme-file): New procedures. Ricardo Wurmus
2020-04-16import/print: package->code: Wrap build system value in module reference....* guix/import/print.scm (package->code): Return build system value with corresponding module. Ricardo Wurmus
2020-04-16import/print: Return license with prefix....* guix/import/print.scm (license->code): Prepend license: prefix. Ricardo Wurmus
2020-04-16gnu: wireshark: Update to 3.2.3....* gnu/packages/networking.scm (wireshark): Update to 3.2.3. Nicolas Goaziou
2020-04-16gnu: python-hy: Update to 0.18.0....* gnu/packages/python-xyz.scm (python-hy): Update to 0.18.0. [arguments]: Make all phases return #t. [propagated-inputs]: Remove python-clint, python-fastentrypoints. Add python-colorama. (python2-hy): Remove variable. Efraim Flashner
2020-04-16gnu: python-icalendar: Update to 4.0.5....* gnu/packages/python-xyz.scm (python-icalendar): Update to 4.0.5. Efraim Flashner
2020-04-16gnu: toot: Update to 0.26.0....* gnu/packages/mastodon.scm (toot): Update to 0.26.0. Efraim Flashner
2020-04-16gnu: python-urwid: Update to 2.1.0....* gnu/packages/python-xyz.scm (python-urwid): Update to 2.1.0. Efraim Flashner
2020-04-16gnu: python-vobject: Update to 0.9.6.1....* gnu/packages/python-xyz.scm (python-vobject): Update to 0.9.6.1. Efraim Flashner
2020-04-16gnu: python-pyicu: Update to 2.4.3....* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.4.3. [properties]: Remove field. (python2-pyicu): Remove package customizations. Efraim Flashner
2020-04-16gnu: khard: Update to 0.16.1....* gnu/packages/mail.scm (khard): Update to 0.16.1. [arguments]: Remove custom 'install-doc phase. Add 'install-completions phase. Efraim Flashner
2020-04-16gnu: xournalpp: Update to 1.0.18....* gnu/packages/pdf.scm (xournalpp): Update to 1.0.18. Nicolas Goaziou
2020-04-16installer: Remove guile-newt definition....This is no longer necessary since 0.0.2 release of Guile-Newt. * gnu/installer.scm (guile-newt): Remove variable. Mathieu Othacehe
2020-04-16gnu: guile-newt: Update to 0.0.2....* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.2, [source]: remove Guile 3.0 snippet. Mathieu Othacehe
2020-04-16gnu: xfce4-taskmanager: Update to 1.2.3....* gnu/packages/xfce.scm (xfce4-taskmanager): Update to 1.2.3. [source]: Hard-code NAME. Tobias Geerinckx-Rice
2020-04-16gnu: xfwm4: Update to 4.14.1....* gnu/packages/xfce.scm (xfwm4): Update to 4.14.1. [source]: Hard-code NAME. Tobias Geerinckx-Rice
2020-04-16gnu: xfdesktop: Update to 4.14.2....* gnu/packages/xfce.scm (xfdesktop): Update to 4.14.2. [source]: Hard-code NAME. Tobias Geerinckx-Rice
2020-04-16gnu: augeas: Use HTTPS home page....* gnu/packages/augeas.scm (augeas)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-04-16gnu: augeas: Update to 1.12.0....* gnu/packages/augeas.scm (augeas): Update to 1.12.0. Tobias Geerinckx-Rice
2020-04-16gnu: xterm: Update to 353....* gnu/packages/xorg.scm (xterm): Update to 353. Tobias Geerinckx-Rice
2020-04-16gnu: Add the GNU MDK....* gnu/packages/education.scm (mdk): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> guy fleury iteriteka
2020-04-16doc: Add dicod-service-type in Dictionary Services....* doc/guix.texi (Miscellaneous Services): Add dicod-service-type in Dictionary Services. Signed-off-by: Ludovic Courtès <ludo@gnu.org> R Veera Kumar
2020-04-16syscalls: 'readdir*' chooses between the Linux and Hurd code at run time....Partly fixes <https://bugs.gnu.org/40574>. Reported by Jan Nieuwenhuizen <janneke@gnu.org>. Previously, we'd choose at expansion time whether to use the Hurd or the Linux variant, taking the cross-compilation target into account. This would lead to the wrong decision when (guix build syscalls) is evaluated while we're cross-compiling to GNU/Hurd. This is a followup to 1ab9e483391f8b62b873833ea71cb0074efa03e7. * guix/build/syscalls.scm (define-generic-identifier) (read-dirent-header, %struct-dirent-header, sizeof-dirent-header): Remove. (readdir*): Rename to... (readdir-procedure): ... this, and add parameters. (readdir*): Define as a call to 'readdir-procedure' as a function of %HOST-TYPE. Ludovic Courtès
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