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2024-03-28gnu: python-upsetplot: Update to 0.9.0.nafkhamdc
* gnu/packages/python-science.scm (python-upsetplot): Update to 0.9.0. [source]: Remove obsolete snippet. [arguments]: Remove custom check phase. [build-system]: Use pyproject-build-system. Change-Id: I68bcd6840577a12594e491e9fd5e114f9261f6c7 Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-28gnu: python-pynacl: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/python-crypto.scm (python-pynacl)[build-system]: Use pyproject-build-system. [arguments]: Remove custom check phase. [source]: Remove unnecessary substitution. Change-Id: Idf2409022abde9f3a59e71cd1fa69ce9f1df6b1f
2024-03-28gnu: Add python-pytest-testmon.nafkhamdc
* gnu/packages/python-check.scm (python-pytest-testmon): New variable. Change-Id: Ia2e6034781898c04bd766145e0352060a975d479 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-28gnu: Add python-contexttimer.nafkhamdc
* gnu/packages/python-xyz.scm (python-contexttimer): New variable. Change-Id: I1ed35f1d0190f0e3a60095c7627b6c17552cb4cc Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-28gnu: python-pynacl: Update to 1.5.0.nafkhamdc
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.5.0. Change-Id: Iadf81b8d67a5d4fa08fbcb9937afa86de33385dc Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-28gnu: r-varhandle: Update home page.Mehrad Mahmoudian
* gnu/packages/cran.scm (r-varhandle)[home-page]: Update to new URL. Change-Id: I8bde12da1348d0fca7f9b9939bff2774ce2b767b Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-27gnu: go-github-com-nbrownus-go-metrics-prometheus: Adjust inputs.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus): Adjust inputs. [propagated-inputs]: Remove go-github-com-stretchr-testify. [native-inputs]: Add go-github-com-stretchr-testify. Change-Id: I9c409fe88e11273e79809772001b73ffa4ed7afa
2024-03-27gnu: go-github-com-nbrownus-go-metrics-prometheus: Fix indentation.Sharlatan Hellseher
* gnu/packages/golng-xyz (go-github-com-nbrownus-go-metrics-prometheus): Fix indentation. Change-Id: I305e0a64fbb89ea073f30f7b91673628097fc263
2024-03-27gnu: go-github-com-miekg-dns: Fix indentation.Sharlatan Hellseher
* gnu/packages/golang-xyz (go-github-com-miekg-dns): Fix indentation. Change-Id: I10f4a9e9e28dd2214e39225a26ec45a0b7f952cf
2024-03-27gnu: go-github-com-cyberdelia-go-metrics-graphite: Fix indentation.Sharlatan Hellseher
* gnu/packages/golang-xyz (go-github-com-cyberdelia-go-metrics-graphite): Fix indentation. Change-Id: Ia758dfd8f2ec683395eaace73617949a8ad897fe
2024-03-27gnu: go-github-com-anmitsu-go-shlex: Fix indentation.Sharlatan Hellseher
* gnu/packages/golang-xyz (go-github-com-anmitsu-go-shlex): Fix indentation. Change-Id: Ib47fbdf3a31a1442cd88ff12a9a2b6c437c283d9
2024-03-27gnu: clipman: Refresh package style.Sharlatan Hellseher
* gnu/packages/xdisorg.scm (clipman): Adjust indentation. [arguments] <#:phases>: Rename 'patch to 'patch-wl-copy-path phase to reflect the purpose. Revert default 'install-license-files phase. [native-inputs]: Remove go-github-com-alecthomas-template and go-github-com-alecthomas-units, they are propagated from go-gopkg-in-alecthomas-kingpin-v2. Change-Id: I5332906c126904ced595aa322be5f933c305c5f7
2024-03-27gnu: clipman: Simplify package.Sharlatan Hellseher
* gnu/packages/xdisorg.scm (clipman): [phases] <#:phases>: Adjust 'patch phase to relay on provided module import path. [inputs]: Remove go-github-com-alecthomas-kingpin; add go-gopkg-in-alecthomas-kingpin-v2. Change-Id: I3d9d82af29672ff94cdbd39b18ec4ed61b8e485f
2024-03-27gnu: go-github-com-alecthomas-kingpin: Adjust inputs.Sharlatan Hellseher
gnu/packages/golang-xyz.scm (go-github-com-alecthomas-kingpin) [native-inputs]: Move go-github-com-alecthomas-units and go-github-com-alecthomas-template from here ... [propagated-inputs]: ... to here. Change-Id: I841ea8cf29ef49008d7a725c9db96b963f263f7f
2024-03-27gnu: Add go-gopkg-in-alecthomas-kingpin-v2.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-gopkg-in-alecthomas-kingpin-v2): New variable. Change-Id: I35a0919b30a191000e922882619e778187b5a0da
2024-03-27gnu: Add go-github-com-alecthomas-kingpin-v2.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-alecthomas-kingpin-v2): New variable. * gnu/packages/golang-xyz.scm (go-github-com-kingpin): Delete variable. Change-Id: If40f318b960e29fd601602d26fd36dcc8fce9583
2024-03-27gnu: Add go-github-com-xhit-go-str2duration-v2.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-xhit-go-str2duration-v2): New variable. Change-Id: I30425e498db6dd8cb736eedffe006346973628ed
2024-03-27gnu: clipman: Update to 1.6.2.Sharlatan Hellseher
* gnu/packages/xdisorg.scm (clipman): Update to 1.6.2. Change-Id: I389f93f2d43f1675f2b33694ba84711e42df4eaf
2024-03-27gnu: clipman: Fix source and home-page URL.Sharlatan Hellseher
The URI https://github.com/yory8/clipman/ no longer exists. The new project's URL was obtained from the Nix package. * gnu/packages/xdisorg.scm (clipman) [source]: Fix URL. [home-page]: As above. Change-Id: I20e9f22780586ce14d925d5cf106e70de8209e1e
2024-03-27gnu: go-github-com-alecthomas-units: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/golang.scm (go-github-com-alecthomas-units): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. * gnu/packages/xdisorg.scm: Remove (gnu packages golang). Change-Id: I9a4d7da82c9ca1b3c4e0d07d97d8fcde30590e33
2024-03-27gnu: go-github-com-alecthomas-template: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/golang.scm (go-github-com-alecthomas-template): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: Iffdd88439819c526cd6dd940192bf48995bf76bc
2024-03-27gnu: go-github-com-alecthomas-kingpin: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/golang.scm (go-github-com-alecthomas-kingpin): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: Ib7609a82c96683809f81479f4eb13f43d85d4a2f
2024-03-27gnu: go-github-com-kballard-go-shellquote: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-kballard-go-shellquote): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. * gnu/packages/xdisorg.scm: Remove (gnu packages syncthing). Add (gnu packages golang-xyz). Change-Id: I3ab4cbc55d8ca0ad8b7fec0130bdb935039f2841
2024-03-27gnu: Add r-ggmosaic.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggmosaic): New variable. Change-Id: Ia399265c01a57074b0cfc29dde45e1900ccc26de
2024-03-27gnu: Add r-productplots.Ricardo Wurmus
* gnu/packages/cran.scm (r-productplots): New variable. Change-Id: I4b8105773e11791e57d6461e8c2b6c65ffc6c6a2
2024-03-27gnu: python-mysqlclient: Update to 2.2.4.Marco Rimoldi
* gnu/packages/databases.scm (python-mysqlclient): Update to 2.2.4. [arguments]<#:phases>: Remove 'fix-test phase. [native-inputs]: Add pkg-config. Change-Id: I57a0b84eb0d56f9cea619b226090cc1ccd84812b Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: python-mysqlclient: Enable selected tests.Marco Rimoldi
* gnu/packages/databases.scm (python-mysqlclient) [build-system]: Change to pyproject-build-system. [arguments] <#:phases>: Add 'fix-test phase. <#:test-flags>: Specify tests to run. [native-inputs]: Add python-pytest. [inputs]: Replace mariadb:dev with mariadb-connector-c. [home-page]: Update. Change-Id: I5ae0873155f9a7cc90a318762b77864665fadc01 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: libtommath: Update to 1.3.0.Efraim Flashner
* gnu/packages/multiprecision.scm (libtommath): Update to 1.3.0. Change-Id: If0b4758abb634f4e7564d90e8a5534ebdf6579a6
2024-03-27home: services: bash: Reorder aliases.Jason Darby
Reported in <https://issues.guix.gnu.org/67652>. * home/services/shells.scm (add-bash-configuration): Reorder aliases. Change-Id: I288856bb6befe378ca60ef78578acc069cb18532 Reported-by: Atte Torri <atte.torri@universite-paris-saclay.fr> Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: Add tree-sitter-matlab.Nicolas Graves
* gnu/packages/tree-sitter.scm (tree-sitter-matlab): New variable. Change-Id: I5a72d20e18ed370852b9a6d3037d94675aad8c4b Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: Add tree-sitter-ungrammar.Paul A. Patience
* gnu/packages/tree-sitter.scm (tree-sitter-ungrammar): New variable. Change-Id: I162e1ffe692aaf0b81080e4df239bba10da477ed Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: Add tree-sitter-ron.Paul A. Patience
* gnu/packages/tree-sitter.scm (tree-sitter-ron): New variable. Change-Id: I26abfa4a298b23a14bcea852c2974e694daddecd Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: Add tree-sitter-hcl.Paul A. Patience
* gnu/packages/tree-sitter.scm (tree-sitter-hcl): New variable. Change-Id: I2522cf5cc30b313c16636821deed2752ea65b43e Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27gnu: Add tree-sitter-kdl.Paul A. Patience
* gnu/packages/tree-sitter.scm (tree-sitter-kdl): New variable. Change-Id: I40a9d9629e29d1682999d9787d4092775be23c19 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-03-27linux-modules: Ignore nonexistent module files on boot.Hilton Chain
This is a follow-up to 8f8ec56052766aa5105d672b77ad9eaca5c1ab3c, which only covers building initrd, while the booting code still tries to load nonexistent files for builtin modules. * gnu/build/linux-modules.scm (load-linux-modules-from-directory): Ignore nonexistent module files. Change-Id: I09ef207e82397e915e671c8464b92bcf90f03dcf
2024-03-27gnu: Add python-icecream.nafkhamdc
* gnu/packages/python-xyz.scm (python-icecream): New variable. Change-Id: I866d0ce591a1b81fdd7e0ee706cb8e9791e70c49 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-27gnu: Add python-pytest-relaxed.nafkhamdc
* gnu/packages/check.scm (python-pytest-relaxed): New variable. Change-Id: I9c506fe6a6586c87d72775a0567fd3c45ba03568 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-03-27gnu: r-bionero: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.2. Change-Id: I419476f683156fa612b35680c5de3f8044851439
2024-03-27gnu: r-flowworkspace: Update to 4.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.3. Change-Id: I2a717e99d7b71df0c3774ad235e0fe87f5b2aa19
2024-03-27gnu: r-rprotobuflib: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.1. Change-Id: I10d2e5f7d7e55039085c51592b2046a340810a0a
2024-03-27gnu: r-flowcore: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.2. Change-Id: I61158d6b9243c4386149364ef0d36a0d1bd5e4b8
2024-03-27gnu: r-trackviewer: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.2. Change-Id: I1b26ba59abbba23d8215a16fdf9bbb7e49e54260
2024-03-27gnu: r-dittoseq: Update to 1.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.3. Change-Id: I85f76e70f0b275749d622dad28346c0912e09b57
2024-03-27gnu: r-diffcyt: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.22.1. Change-Id: Id1d88a4a660908c949107ffaf3ec33e5d69bff11
2024-03-27gnu: r-hdcytodata: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.1. Change-Id: I7c159709261c7862a171aac14962b4b18cf1459f
2024-03-27gnu: r-rstudioapi: Update to 0.16.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.16.0. Change-Id: I587b1c0a7ba302ba158cc8c40d1bf3477a106d8a
2024-03-27gnu: r-dbplyr: Update to 2.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.5.0. Change-Id: I14e5c4a551dc8311d6ee563763a4cd0d0d136c55
2024-03-27gnu: r-lattice: Update to 0.22-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lattice): Update to 0.22-6. Change-Id: I7f273c9264eaddae45bb7d44ee2dbff99546cd91
2024-03-27gnu: r-maxlik: Update to 1.5-2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-maxlik): Update to 1.5-2.1. Change-Id: Iaa44b650388003bbefe20b8d54874475a9d86104
2024-03-27gnu: r-mlr3pipelines: Update to 0.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.5.1. Change-Id: Ie59fd68968bf930d60b7740b6d3e07e2d786e5df
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