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2016-02-25gnu: python-mccabe: Update to 0.4.0.Efraim Flashner
* gnu/packages/python.scm (python-mccabe): Update to 0.4.0. [inputs]: Add python-pytest, python-pytest-runner. (python-mccabe-0.2.1)[inputs]: Only use python-setuptools.
2016-02-25gnu: python-flake8: Update to 2.5.4.Efraim Flashner
* gnu/packages/python.scm (python-flake8): Update to 2.5.4. [inputs]: Use recent python-pep8, python-pyflakes.
2016-02-25gnu: python-pep8: Update to 1.7.0.Efraim Flashner
* gnu/packages/python.scm (python-pep8): Update to 1.7.0.
2016-02-25gnu: python-networkx: Update to 1.11.Efraim Flashner
* gnu/packages/python.scm (python-networkx): Update to 1.11.
2016-02-25gnu: python-hypothesis: Update to 3.0.4.Efraim Flashner
* gnu/packages/python.scm (python-hypothesis): Update to 3.0.4. [native-inputs]: Remove python-setuptools. (python2-hypothesis): Use 'strip-python2-variant'. [native-inputs]: Add python2-enum34, python2-setuptools.
2016-02-25gnu: python-html5lib: Update to 1.0b8.Efraim Flashner
* gnu/packages/python.scm (python-html5lib): Update to 1.0b8.
2016-02-25gnu: python-isodate: Update to 0.5.4.Efraim Flashner
* gnu/packages/python.scm (python-isodate): Update to 0.5.4.
2016-02-25gnu: python-wsgi-intercept: Update to 1.1.2.Efraim Flashner
* gnu/packages/python.scm (python-wsgi-intercept): Update to 1.1.2. [native-inputs]: Add python-six.
2016-02-25gnu: python-pytest-localserver: Update to 0.3.5.Efraim Flashner
* gnu/packages/python.scm (python-pytest-localserver): Update to 0.3.5.
2016-02-25gnu: python-requests-toolbelt: Update to 0.6.0.Efraim Flashner
* gnu/packages/python.scm (python-requests-toolbelt): Update to 0.6.0.
2016-02-25gnu: python-requests: Update to 2.9.1.Efraim Flashner
* gnu/packages/python.scm (python-requests): Update to 2.9.1.
2016-02-25gnu: python-wheel: Update to 0.29.0.Efraim Flashner
* gnu/packages/python.scm (python-wheel): Update to 0.29.0.
2016-02-25gnu: Add python-pastescript.Christopher Allan Webber
* gnu/packages/python.scm (python-pastescript, python2-pastescript): New variables.
2016-02-25gnu: Add python-paste.Christopher Allan Webber
* gnu/packages/python.scm (python-paste, python2-paste): New variables. * gnu/packages/patches/python-paste-remove-timing-test.patch: New file. * gnu/packages/patches/python-paste-remove-website-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add them.
2016-02-25Merge branch 'media-updates'Mark H Weaver
2016-02-25doc: Clarify the form of UUIDs we expect.Ludovic Courtès
Fixes <http://bugs.gnu.org/22797>. Reported by Alex Kost <alezost@gmail.com>. * doc/guix.texi (File Systems): Clarify which UUIDs we're talking about.
2016-02-25http-client: 'http-client/cached' uses unique cache file names.Ludovic Courtès
* guix/http-client.scm (cache-file-for-uri): New procedure. (http-fetch/cached): Use it. Remove 'directory' variable. [update-cache]: Make the 'dirname' of FILE.
2016-02-25http-client: 'http-fetch/cached' updates the cache atomically.Ludovic Courtès
* guix/http-client.scm (http-fetch/cached)[update-cache]: Use 'with-atomic-file-output' instead of 'call-with-output-file'.
2016-02-25gnu: Add missing import in bioinformatics.scm.Ludovic Courtès
This is a followup to 1baee94. * gnu/packages/bioinformatics.scm: Add missing import.
2016-02-25guix system: Restore load path after running the activation script.Ludovic Courtès
Fixes <http://bugs.gnu.org/22753>. Reported by Mark H Weaver <mhw@netris.org>. * guix/scripts/system.scm (save-load-path-excursion): New variable. (upgrade-shepherd-services): Add comment about the issue. (switch-to-system): Use 'save-load-path-excursion' around 'primitive-load' call.
2016-02-25store: Clarify documentation of 'valid-path?'.Ludovic Courtès
* guix/store.scm (valid-path?): Improve docstring. * doc/guix.texi (The Store): Update accordingly.
2016-02-25publish: Do not publish nars for invalid store items.Ludovic Courtès
Before that, /nar requests could succeed if the requested store item exists but is invalid (although such requests were unlikely because the corresponding narinfo request would have failed.) * guix/scripts/publish.scm (render-nar): Add 'store' parameter. Use 'valid-path?' instead of 'file-exists?'. (make-request-handler): Adjust 'render-nar' call accordingly. * tests/publish.scm ("/nar/invalid"): New test.
2016-02-25gnu: Add kyotocabinet.Nils Gillmann
* gnu/packages/databases.scm (kyotocabinet): New variable.
2016-02-25gnu: Add libBigWig.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (libbigwig): New variable.
2016-02-25gnu: guile-json: Update to 0.5.0.Jan Nieuwenhuizen
* gnu/packages/guile.scm (guile-json): Update to 0.5.0. Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-02-25gnu: ardour: Update to 4.7.Ricardo Wurmus
* gnu/packages/audio.scm (ardour): Update to 4.7.
2016-02-25gnu: xdg-utils: Propagate xprop and xset.宋文武
Fixes <http://bugs.gnu.org/22755>. * gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
2016-02-24doc: Improve recent changes in "Binary Installation".Ludovic Courtès
This amends part of c8e2688. * doc/guix.texi (Binary Installation): Improve wording of some parts. Fix Upstart example. Remove incorrect paragraph about locales. Reinstate bit about reproducing the binary tarball.
2016-02-24doc: Clarify who can run 'guix pull'.Ludovic Courtès
Suggested by Chris Marusich <cmmarusich@gmail.com>. * doc/guix.texi (Invoking guix pull): Add paragraph explaining that any user can run 'guix pull'.
2016-02-24gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739].Leo Famulari
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file. * gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.7.3. (libssh-0.5): Rename to... (libssh-0.6): ... this. Update to 0.6.5. [source]: Add patch for CVE-2016-0739. (guile-ssh)[inputs]: Use libssh-0.6. Modified-By: Mark H Weaver <mhw@netris.org>
2016-02-24gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787].Leo Famulari
* gnu/packages/ssh.scm (libssh2): Update to 1.7.0. (libssh2-1.4): New variable. * gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4. Modified-By: Mark H Weaver <mhw@netris.org>
2016-02-24doc: Add details for binary installation.George Clemmer
* doc/guix.texi (Binary Installation): Provide some more details for binary installation, in particular automatic starting of the daemon. Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-02-24doc: Fix minor typos and add missing words.Chris Marusich
* doc/guix.texi (Shepherd Services): Add missing words. (Invoking guix system): Fix typo. (Service Types and Services): Fix typo. * doc/contributing.texi (Submitting Patches): Fix typo. Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-02-24gnu: xf86-video-intel: Update to 2.99.917-1-d167280.Mark H Weaver
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-1-d167280.
2016-02-24gnu: gdb: Update to 7.11.Efraim Flashner
* gnu/packages/gdb.scm (gdb): Update to 7.11.
2016-02-24gnu: kde-frameworks: Update to 5.19.0.Efraim Flashner
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0. (extra-cmake-modules): Update to 5.19.0.
2016-02-24gnu: services: Start X with -configdir.Andy Wingo
* gnu/services/xorg.scm (%default-xorg-modules): New public variable. (xorg-configuration-directory): New function. (xorg-start-command): Add #:modules keyword argument, defaulting to %default-xorg-modules. Build an xorg.conf.d directory from those modules, and pass it to X via the -configdir parameter.
2016-02-24gnu: libxaw: Update to 1.0.13.Andy Wingo
* gnu/packages/xorg.scm (libxaw): Update to 1.0.13.
2016-02-24gnu: libxt: Update to 1.1.5.Andy Wingo
* gnu/packages/xorg.scm (libxt): Update to 1.1.5.
2016-02-24gnu: libx11: Update to 1.6.3.Andy Wingo
* gnu/packages/xorg.scm (libx11): Update to 1.6.3.
2016-02-24gnu: xorg-server: Update to 1.18.1.Andy Wingo
* gnu/packages/xorg.scm (xorg-server): Update to 1.18.1.
2016-02-24gnu: libxxf86vm: Update to 1.1.4.Andy Wingo
* gnu/packages/xorg.scm (libxxf86vm): Update to 1.1.4.
2016-02-24gnu: libxvmc: Update to 1.0.9.Andy Wingo
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.9.
2016-02-24gnu: libxrandr: Update to 1.5.0.Andy Wingo
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.0.
2016-02-24gnu: libxi: Update to 1.7.6.Andy Wingo
* gnu/packages/xorg.scm (libxi): Update to 1.7.6.
2016-02-24gnu: xproto: Update to 7.0.28.Andy Wingo
* gnu/packages/xorg.scm (xproto): Update to 7.0.28.
2016-02-24gnu: libxrender: Update to 0.9.9.Andy Wingo
* gnu/packages/xorg.scm (libxrender): Update to 0.9.9.
2016-02-24gnu: libxp: Update to 1.0.3.Andy Wingo
* gnu/packages/xorg.scm (libxp): Update to 1.0.3.
2016-02-24gnu: xvinfo: Update to 1.1.3.Andy Wingo
* gnu/packages/xorg.scm (xvinfo): Update to 1.1.3.
2016-02-24gnu: xmodmap: Update to 1.0.9.Andy Wingo
* gnu/packages/xorg.scm (xmodmap): Update to 1.0.9.
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