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2018-06-04gnu: isync: Add SASL support.Tobias Geerinckx-Rice
This adds ~5.5 MiB (7.5%) to isync's now-78.6 MiB closure. * gnu/packages/mail.scm (isync)[inputs]: Add CYRUS-SASL.
2018-06-04gnu: perf: Work around GCC bug.Ludovic Courtès
Works around <https://bugs.gnu.org/31708>. * gnu/packages/patches/perf-gcc-ice.patch: New patch. * gnu/packages/linux.scm (perf)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-06-04gnu: signing-party: Update to commit d6f2296.Ludovic Courtès
* gnu/packages/gnupg.scm (signing-party): Update to commit d6f2296. [home-page]: Change to salsa.debian.org. [source]: Use git-fetch. [arguments]: Remove 'change-directory' phase. In 'configure' phase, modify 'gpgwrap/Makefile' instead of 'gpgwrap/src/Makefile'.
2018-06-04Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-04gnu: python-pyqt: Update to 5.10.1.Efraim Flashner
* gnu/packages/qt.scm (python-pyqt): Update to 5.10.1. [inputs]: Remove qtwebkit. [arguments]: Add custom phase to fix compilation with Qt 5.11.
2018-06-04gnu: python-sip: Update to 4.19.8.Efraim Flashner
* gnu/packages/qt.scm (python-sip): Update to 4.19.8.
2018-06-03gnu: gcompris-qt: Update to 0.91.Efraim Flashner
* gnu/packages/education.scm (gcompris-qt): Update to 0.91. [arguments]: Add custom phase to fix building with Qt 5.11.
2018-06-03gnu: quassel: Fix building with Qt 5.11.Efraim Flashner
* gnu/packages/irc.scm (quassel)[sources]: Add patch. Return #t from snippet. * gnu/packages/patches/quassel-qt-5.11.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-06-03gnu: w3m: Enable image support.Rutger Helling
* gnu/packages/w3m.scm (w3m)[inputs]: Add gdk-pixbuf, libx11.
2018-06-03gnu: keepassxc: Fix compilation with Qt 5.11.Efraim Flashner
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add custom 'patch-sources phase to include missing headers.
2018-06-03Merge branch 'master' into core-updatesMark H Weaver
2018-06-03gnu: rust: Fix build for armhf and mips64el.Mark H Weaver
This is a followup to commit 514026d7de36b299238aff9dfcc2f898fb04072a. * gnu/packages/rust.scm (nix-system->gnu-triplet-for-rust): New variable. (rust-bootstrap, mrustc, rust-1.23): Use 'nix-system->gnu-triplet-for-rust' instead of 'nix-system->gnu-triplet'.
2018-06-02gnu: xxd: Remove all inherited inputs.Efraim Flashner
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
2018-06-02gnu: vim: Update to 8.1.0026.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 8.1.0026. [arguments]: Update substitute list on custom 'patch-config-files phase. [inputs]: Remove inetutils.
2018-06-02gnu: xxd: Return true from all phases.Efraim Flashner
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir phase.
2018-06-02gnu: Add emacs-fish-completion.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-fish-completion): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-org.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-multiedit.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-mu4e.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-magit.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-magit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02gnu: Add emacs-evil-ediff.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02self: Do not build (guix man-db).Ludovic Courtès
* guix/self.scm (specification->package): Remove "guile-gdbm-ffi" and "guile2.0-gdbm-ffi". (compiled-guix)[guile-gdbm-ffi]: Remove. [dependencies]: Remove it. [*core-modules*]: Add "guix/man-db.scm" via #:extra-files. [*extra-modules*]: Exclude "guix/man-db.scm".
2018-06-02gnu: guile-json: Update to 1.0.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-json): Update to 1.0.1. [source]: Switch to github.com. Adjust 'snippet' to modify 'configure.ac' and 'Makefile.am'. [native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-02gnu: r-scater: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0. [propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove r-matrixstats and r-biomart.
2018-06-02import: cran: Update to Bioconductor 3.7.Ricardo Wurmus
* guix/import/cran.scm (%bioconductor-version): Update to 3.7.
2018-06-02gnu: r-mvtnorm: Update to 1.0-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02gnu: r-rgraphviz: Update to 2.24.0.Ricardo Wurmus
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02gnu: r-scran: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2. [propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02gnu: r-delayedmatrixstats: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02gnu: r-singlecellexperiment: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02gnu: r-beachmat: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1. [inputs]: Add zlib.
2018-06-02gnu: r-rhdf5lib: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1. [arguments]: Adjust substitutions.
2018-06-02gnu: r-hdf5array: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02gnu: r-qvalue: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02gnu: r-hitc: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02gnu: r-fithic: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02gnu: r-sushi: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02gnu: r-gwascat: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02gnu: r-gviz: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02gnu: r-gqtlstats: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0. [propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02gnu: r-ldblock: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0. [propagated-inputs]: Add r-biocgenerics.
2018-06-02gnu: r-erma: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0. [propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and r-iranges.
2018-06-02gnu: r-snpstats: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02gnu: r-gqtlbase: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02gnu: r-ggbio: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02gnu: r-biovizbase: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02gnu: r-organismdbi: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02gnu: r-ensembldb: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1. [propagated-inputs]: Remove r-annotationhub.
2018-06-02gnu: r-dirichletmultinomial: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
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