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2017-04-06gnu: r-multitaper: Update to 1.0-13....* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13. Ricardo Wurmus
2017-04-06gnu: r-xml2: Update to 1.1.1....* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1. Ricardo Wurmus
2017-04-06gnu: r-ade4: Update to 1.7-6....* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6. Ricardo Wurmus
2017-04-06gnu: r-data-table: Update to 1.10.4....* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4. Ricardo Wurmus
2017-04-06gnu: r-chron: Update to 2.3-50....* gnu/packages/statistics.scm (r-chron): Update to 2.3-50. Ricardo Wurmus
2017-04-06gnu: r-cluster: Update to 2.0.6....* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6. Ricardo Wurmus
2017-04-06gnu: r-dbi: Update to 0.6-1....* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1. Ricardo Wurmus
2017-04-06gnu: r-gdtools: Update to 0.1.4....* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4. Ricardo Wurmus
2017-04-06gnu: r-stringr: Update to 1.2.0....* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0. Ricardo Wurmus
2017-04-06gnu: r-stringi: Update to 1.1.3....* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3. Ricardo Wurmus
2017-04-06gnu: r-rcpp: Update to 0.12.10....* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10. Ricardo Wurmus
2017-04-06gnu: r-digest: Update to 0.6.12....* gnu/packages/statistics.scm (r-digest): Update to 0.6.12. Ricardo Wurmus
2017-04-06gnu: r-survival: Update to 2.41-3....* gnu/packages/statistics.scm (r-survival): Update to 2.41-3. Ricardo Wurmus
2017-04-06gnu: r-mgcv: Update to 1.8-17....* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17. Ricardo Wurmus
2017-04-06gnu: r-matrix: Update to 1.2-8....* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8. Ricardo Wurmus
2017-04-06gnu: r-lattice: Update to 0.20-35....* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35. Ricardo Wurmus
2017-04-06gnu: r-rprojroot: Update to 1.2....* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2. Ricardo Wurmus
2017-04-06gnu: r-htmltable: Update to 1.9....* gnu/packages/web.scm (r-htmltable): Update to 1.9. [propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets". Ricardo Wurmus
2017-04-06gnu: r-curl: Update to 2.4....* gnu/packages/web.scm (r-curl): Update to 2.4. Ricardo Wurmus
2017-04-06gnu: r-genomeinfodb: Update to 1.10.3....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3. [propagated-inputs]: Add "r-rcurl". Ricardo Wurmus
2017-04-06gnu: r-xvector: Update to 0.14.1....* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1. Ricardo Wurmus
2017-04-06gnu: r-bioccheck: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1. [propagated-inputs]: Remove "r-knitr" and "r-devtools". Ricardo Wurmus
2017-04-06gnu: r-tidyr: Update to 0.6.1....* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1. [propagated-inputs]: Add "r-tibble". Ricardo Wurmus
2017-04-06gnu: r-roxygen2: Update to 6.0.1....* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1. [propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2". Ricardo Wurmus
2017-04-06gnu: Add r-commonmark....* gnu/packages/statistics.scm (r-commonmark): New variable. Ricardo Wurmus
2017-04-06gnu: Add r-desc....* gnu/packages/statistics.scm (r-desc): New variable. Ricardo Wurmus
2017-04-06gnu: r-readr: Update to 1.1.0....* gnu/packages/statistics.scm (r-readr): Update to 1.1.0. [propagated-inputs]: Remove "r-curl". Ricardo Wurmus
2017-04-06gnu: r-tibble: Update to 1.3.0....* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0. [propagated-inputs]: Remove "r-assertthat". Ricardo Wurmus
2017-04-06gnu: r-jsonlite: Update to 1.3....* gnu/packages/web.scm (r-jsonlite): Update to 1.3. Ricardo Wurmus
2017-04-06gnu: ldc-bootstrap: Delete failing test....* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in build phase. Ricardo Wurmus
2017-04-06gnu: guile-aspell: Switch to Guile 2.2....* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with GUILE-2.2. Ludovic Courtès
2017-04-06gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir)....* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove #:configure-flags. Add 'set-guilesitedir' phase. Ludovic Courtès
2017-04-06gnu: guile-aspell: Update to 0.4....* gnu/packages/guile.scm (guile-aspell): Update to 0.4. [arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source tree layout. Ludovic Courtès
2017-04-06system: Support the --root option in 'guix system'....Fixes <https://bugs.gnu.org/26271>. * guix/scripts/system.scm (perform-action): Add #:gc-root parameter and honor it. (show-help): Document the --root option. (%options): Add 'root'. (process-action): Pass 'root' option to perform-action as #:gc-root. * doc/guix.texi (Invoking guix system): Document '--root'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich
2017-04-06build: Add and export procedure 'register-root*'....* guix/scripts/build.scm (register-root*): Add and export it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich
2017-04-05environment: Deal with single-entry search paths....This is a followup to fcd75bdbfa99d14363b905afbf914eec20e69df8. * guix/scripts/environment.scm (create-environment): Check whether SEPARATOR is #f. Ludovic Courtès
2017-04-05doc: Add "Documentation" section....* doc/guix.texi (Documentation): New node. Ludovic Courtès
2017-04-05profiles: Generate database file for man pages....The mandb database file (index.db) is used by the "apropos" (whatis) or "man -k" commands. This change introduces a profile hook to generate such database file. * guix/profiles.scm (manual-database): New procedure. (%default-profile-hooks): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Maxim Cournoyer
2017-04-05build-system/python: 'package-with-explicit-python' uses 'package-mapping'....* guix/build-system/python.scm (package-with-explicit-python) [package-variant, cut?]: New procedures. [transform]: Remove 'mlambdaq' form and input tuple handling. Use 'package-mapping'. Ludovic Courtès
2017-04-05packages: Add 'package-mapping' and base 'package-input-rewriting' on it....* guix/packages.scm (package-mapping): New procedure. (package-input-rewriting): Rewrite in terms of 'package-mapping'. * tests/packages.scm ("package-mapping"): New test. * doc/guix.texi (Defining Packages): Document it. Ludovic Courtès
2017-04-05Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."...This reverts commit 01fe019166fe8a925b3bf3b489792b52b1b6ca7a, which was unneeded because IlmBase is already listed as 'Requires' in 'OpenEXR.pc'. Ludovic Courtès
2017-04-05Revert "gnu: bc: Update to 1.07."...This reverts commit dfee7daedb760f1b1d7506829ca31633f4173356. It causes the linux-libre@4.9 build to hang (command-line usage works fine). Tobias Geerinckx-Rice
2017-04-05gnu: Move audacity to audio.scm....* gnu/packages/audacity.scm: Remove file and move audacity... * gnu/packages/audio.scm: ...here. * gnu/local.mk: Remove reference to removed file. Kei Kebreau
2017-04-05import cran: Distinguish Bioconductor data packages....* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor data packages. (bioconductor-data-package?): New procedure. Ricardo Wurmus
2017-04-05gnu: sra-tools: Fix glibc naming conflict....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase "patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25. Ricardo Wurmus
2017-04-05gnu: sra-tools: Use "modify-phases" syntax....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases" syntax. Ricardo Wurmus
2017-04-05gnu: diamond: Update to 0.8.37....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37. Ben Woodcroft
2017-04-05download: Update the GnuPG mirror list....* guix/download.scm (%mirrors) <gnupg>: Use HTTP for TU Wien mirror. Leo Famulari
2017-04-05gnu: kdevelop: Update to 5.1.0....* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0. Thomas Danckaert
2017-04-05gnu: bc: Update to 1.07....* gnu/packages/algebra.scm (bc): Update to 1.07. [native-inputs]: Add ed and texinfo. [arguments]: Use default ‘configure’ phase. Tobias Geerinckx-Rice
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