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2020-04-14gnu: r-s4vectors: Update to 0.24.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
2020-04-14gnu: r-httpcode: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
2020-04-14gnu: r-isoband: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-isoband): Update to 0.2.1. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-anthropometry: Update to 1.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-anthropometry): Update to 1.14. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-lhs: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-lhs): Update to 1.0.2. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-txtplot: Update to 1.0-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
2020-04-14gnu: r-parameters: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
2020-04-14gnu: r-sf: Update to 0.9-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-1.
2020-04-14gnu: r-spdata: Update to 0.3.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
2020-04-14gnu: r-classint: Update to 0.4-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-classint): Update to 0.4-3. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-lemon: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-lemon): Update to 0.4.4. [propagated-inputs]: Add r-rlang.
2020-04-14gnu: r-compositions: Update to 1.40-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
2020-04-14gnu: r-lmertest: Update to 3.1-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
2020-04-14gnu: r-usethis: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-usethis): Update to 1.6.0. [propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
2020-04-14gnu: r-fs: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fs): Update to 1.4.1.
2020-04-14gnu: r-effectsize: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.0. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-multcomp: Update to 1.4-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
2020-04-14gnu: r-survey: Update to 4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-survey): Update to 4.0.
2020-04-14gnu: r-sjmisc: Update to 2.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-arules: Update to 1.6-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-arules): Update to 1.6-5.
2020-04-14gnu: r-xfun: Update to 0.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.13. [native-inputs]: Add comment about not adding r-knitr.
2020-04-14gnu: r-rcpp: Update to 1.0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
2020-04-14gnu: r-lubridate: Update to 1.7.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8. [propagated-inputs]: Remove r-stringr; add r-generics. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-cairo: Update to 1.5-12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.
2020-04-14gnu: r-lme4: Update to 1.1-23.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-23. [native-inputs]: Add r-knitr. [propagated-inputs]: Add r-statmod.
2020-04-14gnu: r-mclust: Update to 5.4.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.6. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-sfsmisc: Update to 1.1-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-6.
2020-04-14gnu: r-plotly: Update to 4.9.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.1.
2020-04-14gnu: r-devtools: Update to 2.3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.0. [native-inputs]: Add r-knitr.
2020-04-14gnu: r-backports: Update to 1.1.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.1.6.
2020-04-14gnu: r-xml2: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.1.
2020-04-14gnu: r-gdtools: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.2.
2020-04-14gnu: r-reshape2: Update to 1.4.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.4.
2020-04-14gnu: r-survival: Update to 3.1-12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 3.1-12.
2020-04-14gnu: r-nlme: Update to 3.1-147.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-147.
2020-04-14gnu: Add rkdeveloptool.Jan (janneke) Nieuwenhuizen
* gnu/packages/hardware.scm (rkdeveloptool): New variable.
2020-04-14doc: Improve anchor collection.Ludovic Courtès
This allows us to catch "operating_002dsystem-1", for instance. * doc/build.scm (syntax-highlighted-html)[build](anchor-id->key): Drop "-1" & co. from ID.
2020-04-14doc: Avoid invalid 'match' pattern in 'syntax-highlighted-html'.Ludovic Courtès
This is a followup to da9deba13d551e316f5a99a614834efa27ddc7d1. Last-minute modification of the 'match' pattern would lead to an error: "multiple ellipsis patterns not allowed at same level" * doc/build.scm (syntax-highlighted-html)[build](collect-anchors): Add 'worthy-entry?' procedure and use it instead of the unsupported pattern for ('dt ...).
2020-04-14doc: Emit hyperlinks in HTML output for @lisp snippets.Ludovic Courtès
This makes it easier to jump to the definition of a procedure or variable when looking at a code snippet. There can be false-positive because scoping rules are ignored, for example, but it should be a good approximation. * doc/build.scm (syntax-highlighted-html)[build](highlights->sxml*): Add 'anchors' parameter. Add clause for ('symbol text). (syntax-highlight): Add 'anchors' parameter. Wrap body in named let and use it in recursive calls. Pass ANCHORS to 'highlights->sxml*'. (underscore-decode, anchor-id->key, collect-anchors, html?): New procedures. (process-file): Add 'anchors' parameter. and honor it. Rewrite mono-node and multi-node HTML files separately.
2020-04-14weather: Delete duplicate entries coming from '--manifest'.Ludovic Courtès
* guix/scripts/weather.scm (load-manifest): Call 'delete-duplicates'.
2020-04-14maint: Ensure substitutes are available for '%default-xorg-modules'.Ludovic Courtès
* etc/release-manifest.scm (%system-packages): Append %DEFAULT-XORG-MODULES.
2020-04-14maint: Actually check for the availablility of system packages.Ludovic Courtès
* etc/release-manifest.scm (%system-manifest): New variable. <top level>: Add it in 'concatenate-manifests' call.
2020-04-14gnu: Add moptilities.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-moptilities, sbcl-moptilities): New variables.
2020-04-14gnu: Add perl-authen-passphrase.Paul Garlick
* gnu/packages/perl.scm (perl-authen-passphrase): New variable.
2020-04-14gnu: Add perl-digest-md4.Paul Garlick
* gnu/packages/perl.scm (perl-digest-md4): New variable.
2020-04-14gnu: Add perl-crypt-des.Paul Garlick
* gnu/packages/perl.scm (perl-crypt-des): New variable.
2020-04-14gnu: Add perl-crypt-cbc.Paul Garlick
* gnu/packages/perl.scm (perl-crypt-cbc): New variable.
2020-04-14gnu: Add perl-crypt-mysql.Paul Garlick
* gnu/packages/perl.scm (perl-crypt-mysql): New variable.
2020-04-14gnu: Add perl-crypt-passwdmd5.Paul Garlick
* gnu/packages/perl.scm (perl-crypt-passwdmd5): New variable.
2020-04-14gnu: Add perl-crypt-unixcrypt_xs.Paul Garlick
* gnu/packages/perl.scm (perl-crypt-unixcrypt_xs): New variable.
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