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2019-11-26gnu: Add pam-mount....* gnu/packages/admin.scm (pam-mount): New variable. * gnu/packages/patches/pam-mount-luks2-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Guillaume Le Vaillant
2019-11-26gnu: Add libhx....* gnu/packages/c.scm (libhx): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Guillaume Le Vaillant
2019-11-26daemon: boost::format: Fix typo "referred"....* nix/boost/format/exceptions.hpp (too_few_args): Fix typo. (too_many_args): Fix typo. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vagrant Cascadian
2019-11-26guix build: '--keep-failed' implies '--no-offload'....* guix/scripts/build.scm (set-build-options-from-command-line): Pass #:offload? #f when 'keep-failed? is true. * doc/guix.texi (Common Build Options): Document it. Ludovic Courtès
2019-11-26Use 'offload?' instead of 'build-hook?' internally....* guix/scripts/archive.scm (%default-options): Replace 'build-hook?' with 'offload?'. * guix/scripts/build.scm (set-build-options-from-command-line): Pass #:offload? instead of #:use-build-hook?. (%standard-build-options): Use the 'offload? key instead of 'build-hook?. (%default-options): Replace 'build-hook?' with 'offload?'. * guix/scripts/copy.scm (%default-options): Likewise. * guix/scripts/deploy.scm (%default-options): Likewise. * guix/scripts/environment.scm (%default-options): Likewise. * guix/scripts/pack.scm (%default-options): Likewise. * guix/scripts/package.scm (%default-options): Likewise. * guix/scripts/pull.scm (%default-options): Likewise. * guix/scripts/system.scm (%default-options): Likewise. * guix/scripts/time-machine.scm (%default-options): Likewise. * guix/store.scm (set-build-options): Have #:use-build-hook? default to *unspecified*. Add #:offload?. Add call to 'warn-about-deprecation' when #:use-build-hook? is specified. Ludovic Courtès
2019-11-26guix build, daemon: Rename "--no-build-hook" to "--no-offload"....This is a followup to bc69ea2d605810cc32e13ed03d5848b8dc358b61. * guix/scripts/build.scm (show-build-options-help): Rename "--no-build-hook" to "--no-offload". (%standard-build-options): Likewise, and warn when "--no-build-hook" is passed. * nix/nix-daemon/guix-daemon.cc (options): Add "--no-offload" and mark "--no-build-hook" as hidden. * guix/scripts/offload.scm: Adjust comment. * doc/guix.texi (Invoking guix-daemon, Common Build Options): Replace "--no-build-hook" with "--no-offload". * etc/completion/fish/guix.fish, etc/completion/zsh/_guix: Adjust accordingly. Ludovic Courtès
2019-11-26doc: cookbook: Add cross-references to the Guile manual....* doc/guix-cookbook.texi (A Scheme Crash Course): Add cross-reference to the Guile manual. Ludovic Courtès
2019-11-26doc: cookbook: Use @result{} & co. instead of a '>' prompt....* doc/guix-cookbook.texi (A Scheme Crash Course) (Extended example): Use @result{}, @print{}, and @error{}. Ludovic Courtès
2019-11-26doc: cookbook: Use Texinfo quotes....* doc/guix-cookbook.texi: Use Texinfo quotes ``like this'' instead of straight quotes or curly quotes. Ludovic Courtès
2019-11-26doc: cookbook: Add cross-reference about ./pre-inst-env....* doc/guix-cookbook.texi (Direct checkout hacking): Refer to "Running Guix Before It Is Installed". Ludovic Courtès
2019-11-26doc: cookbook: Use @lisp for Scheme snippets....* doc/guix-cookbook.texi: Use @lisp instead of @example where appropriate. Ludovic Courtès
2019-11-26tests: Avoid unnecessary use of 'mock'....* tests/build-utils.scm ("wrap-script, simple case"): Use the real 'which' instead of mocking it. Ludovic Courtès
2019-11-26tests: Avoid (catch 'srfi-34 …) form....* tests/build-utils.scm ("wrap-script, raises condition"): Use 'guard' instead of "catch 'srfi-34". Ludovic Courtès
2019-11-25gnu: linux-libre: Update to 5.3.13....* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.13. (linux-libre-5.3-pristine-source): Update hash. Mark H Weaver
2019-11-25gnu: linux-libre@4.19: Update to 4.19.86....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.86. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2019-11-25gnu: linux-libre@4.14: Update to 4.14.156....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.156. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2019-11-25gnu: Add netcat-openbsd....* gnu/packages/admin.scm (netcat-openbsd): New variable. Alex Griffin
2019-11-25gnu: r-rrcov: Update to 1.4-9....* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-9. Ricardo Wurmus
2019-11-25gnu: r-future: Update to 1.15.1....* gnu/packages/cran.scm (r-future): Update to 1.15.1. Ricardo Wurmus
2019-11-25gnu: r-epi: Update to 2.40....* gnu/packages/cran.scm (r-epi): Update to 2.40. Ricardo Wurmus
2019-11-25gnu: r-vioplot: Update to 0.3.3....* gnu/packages/cran.scm (r-vioplot): Update to 0.3.3. Ricardo Wurmus
2019-11-25gnu: mes: Update to 0.21....* gnu/packages/mes.scm (mes): Update to 0.21. Jan Nieuwenhuizen
2019-11-25gnu: guile-gi: Update to 0.2.1....* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.2.1. [arguments]: Add phase to start Xorg server for tests. [native-inputs]: Add xorg-server. Ricardo Wurmus
2019-11-25gnu: Add bsequencer....* gnu/packages/music.scm (bsequencer): New variable. Ricardo Wurmus
2019-11-25gnu: r-bookdown: Update to 0.16....* gnu/packages/cran.scm (r-bookdown): Update to 0.16. Ricardo Wurmus
2019-11-25gnu: r-protviz: Update to 0.5.1....* gnu/packages/cran.scm (r-protviz): Update to 0.5.1. [inputs]: Remove perl and python-2. Ricardo Wurmus
2019-11-25gnu: r-rnifti: Update to 1.0.0....* gnu/packages/cran.scm (r-rnifti): Update to 1.0.0. Ricardo Wurmus
2019-11-25gnu: r-tidytree: Update to 0.3.0....* gnu/packages/cran.scm (r-tidytree): Update to 0.3.0. Ricardo Wurmus
2019-11-25gnu: r-sjplot: Update to 2.8.0....* gnu/packages/cran.scm (r-sjplot): Update to 2.8.0. [propagated-inputs]: Remove r-broom and r-nlme; add r-effectsize and r-parameters. Ricardo Wurmus
2019-11-25gnu: r-tidyverse: Update to 1.3.0....* gnu/packages/cran.scm (r-tidyverse): Update to 1.3.0. [propagated-inputs]: Add r-pillar. Ricardo Wurmus
2019-11-25gnu: r-parameters: Update to 0.3.0....* gnu/packages/cran.scm (r-parameters): Update to 0.3.0. Ricardo Wurmus
2019-11-25gnu: r-abn: Update to 2.2....* gnu/packages/cran.scm (r-abn): Update to 2.2. Ricardo Wurmus
2019-11-25gnu: r-limsolve: Update to 1.5.6....* gnu/packages/cran.scm (r-limsolve): Update to 1.5.6. Ricardo Wurmus
2019-11-25gnu: r-prodlim: Update to 2019.11.13....* gnu/packages/cran.scm (r-prodlim): Update to 2019.11.13. Ricardo Wurmus
2019-11-25gnu: r-webshot: Update to 0.5.2....* gnu/packages/cran.scm (r-webshot): Update to 0.5.2. Ricardo Wurmus
2019-11-25gnu: r-insight: Update to 0.7.0....* gnu/packages/cran.scm (r-insight): Update to 0.7.0. Ricardo Wurmus
2019-11-25gnu: Add r-effectsize....* gnu/packages/cran.scm (r-effectsize): New variable. Ricardo Wurmus
2019-11-25gnu: r-rcppeigen: Update to 0.3.3.7.0....* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.7.0. Ricardo Wurmus
2019-11-25gnu: r-rlang: Update to 0.4.2....* gnu/packages/statistics.scm (r-rlang): Update to 0.4.2. Ricardo Wurmus
2019-11-25gnu: r-digest: Update to 0.6.23....* gnu/packages/statistics.scm (r-digest): Update to 0.6.23. Ricardo Wurmus
2019-11-25gnu: r-pheatmap: Move to (gnu packages cran)....* gnu/packages/statistics.scm (r-pheatmap): Move from here... * gnu/packages/cran.scm (r-pheatmap): ...to here. Ricardo Wurmus
2019-11-25gnu: r-scales: Update to 1.1.0....* gnu/packages/cran.scm (r-scales): Update to 1.1.0. [propagated-inputs]: Remove r-rcpp; add r-farver and r-lifecycle. Ricardo Wurmus
2019-11-25gnu: r-scales: Move to (gnu packages cran)....* gnu/packages/statistics.scm (r-scales): Move variable from here... * gnu/packages/cran.scm (r-scales): ...to here. Ricardo Wurmus
2019-11-25gnu: sdsl-lite: Don't use bundled libraries....* gnu/packages/datastructures.scm (sdsl-lite)[source]: Remove bundled libraries in a snippet. Add patch to link to external libraries. [arguments]: Add phase to install static library. [native-inputs]: Add libdivsufsort. Efraim Flashner
2019-11-25gnu: sdsl-lite: Remove unused inputs....Documentation also wants graphviz, which drastically increases 'guiz size sdsl-lite'. * gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Remove doxygen. Efraim Flashner
2019-11-25gnu: libdivsufsort: Move to datastructures.scm....* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ... * gnu/packages/datastructures.scm: ... here. Efraim Flashner
2019-11-25gnu: Add boost-static....* gnu/packages/boost.scm (boost-static): New variable. Efraim Flashner
2019-11-25gnu: coq-bignums: Don't use unstable tarball....* gnu/pacakges/coq.scm (coq-bignums)[source]: Download using git-fetch. Efraim Flashner
2019-11-25gnu: bioperl-minimal: Don't use unstable tarball....* gnu/packages/bioinformatics.scm (bioperl-minimal)[source]: Download using git-fetch. Efraim Flashner
2019-11-25gnu: innoextract: Update to 1.8....* gnu/packages/compression.scm (innoextract): Update to 1.8. Efraim Flashner
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