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2024-01-22gnu: r-mousegastrulationdata: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.16.0. Change-Id: I18a4fe4dbbcf3cc7f19084170fc8280fd4d5e7cf
2024-01-22gnu: r-macrophage: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.18.0. Change-Id: I51228161aac4cb10470aa2262fdc507a4cb903ec
2024-01-22gnu: r-italicsdata: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.40.0. Change-Id: I55a0100167f98571a562c0ca5fddbe41afeaf3d7
2024-01-22gnu: r-illumina450probevariants-db: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.38.0. Change-Id: Ic5af6f5e7ba653edc5ed785f2b3e9d522e7586af
2024-01-22gnu: r-hdcytodata: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.0. Change-Id: I06afd0ffdd8c1b77ce03e9aabe59f150c28e6141
2024-01-22gnu: r-genomationdata: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.34.0. Change-Id: Ia8e4535efcdcbb0e706b1e9682594467ab8c2fda
2024-01-22gnu: r-genelendatabase: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.38.0. Change-Id: Idf120599c34af21cd3c5c854d434c93c702f0cd4
2024-01-22gnu: r-flowsorted-blood-epic: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.6.0. Change-Id: I458aa7c0ac482d1e60d6afb66b236ea6886d7ce6
2024-01-22gnu: r-flowsorted-blood-450k: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.40.0. Change-Id: Ia2d2ae18c80d3a4a7858026a424da1537d657782
2024-01-22gnu: r-copyhelper: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.34.0. Change-Id: I2cfa340e85fb723615295949ef614db1761f9c6e
2024-01-22gnu: r-chromstardata: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.28.0. Change-Id: I5146185d21a589b93152fe67df4e4a100a0b0a33
2024-01-22gnu: r-champdata: Update to 2.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.34.0. Change-Id: I658aab6c78df1fcbd7fb4d34df144635a2a10347
2024-01-22gnu: r-celldex: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.12.0. Change-Id: I565b21aafa46cb710a8acc3ab16b7905614e6838
2024-01-22gnu: r-breakpointrdata: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.20.0. Change-Id: I1fe98a2e5fd8bf4b3106c7315dda8dee906c5152
2024-01-22gnu: r-biscuiteerdata: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.16.0. [propagated-inputs]: Add r-genomicranges. Change-Id: I5459630b266f04bbac50562cb134e9ca28bbc2d7
2024-01-22gnu: r-bladderbatch: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.40.0. Change-Id: I2d5ec797815dd0101da8692b1fa320020c33ab85
2024-01-22gnu: r-bcellviper: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.38.0. Change-Id: Iaac28d6376364c0d0e30c29deb6df22c40b18b29
2024-01-22gnu: r-arrmdata: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.38.0. Change-Id: Id1c900cd1a058057d18129c7f2d373bc4772d5cd
2024-01-22gnu: r-aneufinderdata: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0. Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578
2024-01-22gnu: r-adductdata: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0. Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca
2024-01-22gnu: r-pfam-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0. Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682
2024-01-22gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0. Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6
2024-01-22gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5. [propagated-inputs]: Add r-genomeinfodb. Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6
2024-01-22gnu: r-org-mm-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0. Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a
2024-01-22gnu: r-org-dr-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0. Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
2024-01-22gnu: r-org-dm-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0. Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
2024-01-22gnu: r-org-ce-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0. Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
2024-01-22gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1. Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725
2024-01-22gnu: r-go-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0. Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7
2024-01-22gnu: r-genomeinfodbdata: Update to 1.2.11.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11. Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548
2024-01-22gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3. Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f
2024-01-22gnu: r-reactome-db: Update to 1.86.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2. Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453
2024-01-22gnu: r-org-sc-sgd-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0. Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed
2024-01-22gnu: r-org-bt-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0. Change-Id: I4385882eeb83326af88141b301f892632f6cf678
2024-01-22gnu: r-org-eck12-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0. Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c
2024-01-22import/cran: Set HOME when ExperimentHub is among the inputs.Ricardo Wurmus
* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when ExperimentHub is among inputs. Change-Id: Ie3a2443934704eed8694a76a651b806209722421
2024-01-22import/cran: Also update annotation and experiment packages.Ricardo Wurmus
* guix/import/cran.scm (latest-bioconductor-release): Determine package type and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI. (%bioconductor-updater): Compose all bioconductor predicates. Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
2024-01-22gnu: make-crust-package: Unite firmware and tools.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Perform union of make-crust-firmware and make-crust-tools. * gnu/packages/firmware.scm (make-crust-firmware): New procedure. Change-Id: I687bb6d53aae9bd60ed988baf9d17e92f31faa7b
2024-01-22gnu: Add make-crust-tools.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-tools): New procedure. Change-Id: Iac05ecf1796e4c10692a423c12423ea9b078d141
2024-01-22gnu: make-crust-package: Use or1k-elf as target.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Use or1k-elf as the target. Change-Id: I6c8bf053527f1e12e35402f18cebf8e75557c788
2024-01-22gnu: make-crust-package: Update to 0.6.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Update to 0.6. Do not install host tool as it is not built by default. Change-Id: Ia79ae8208589601d32235f6d8ace9dce3f8d74f9
2024-01-22gnu: make-crust-package: Memoize.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package): Use mlambda. Change-Id: I2d916b96bc650f3731a69505e086cf8f8f470809
2024-01-22gnu: make-crust-package: Use shorter synopsis.Jean-Pierre De Jesus DIAZ
* gnu/packages/firmware.scm (make-crust-package) <synopsis>: Make it short. Change-Id: I8b93b25a9a6a75aaa92ffa590d0fd46a5511fd49
2024-01-22gnu: Add gcc-cross-or1k-elf-toolchain.Jean-Pierre De Jesus DIAZ
* gnu/packages/cross-toolchain.scm (gcc-cross-or1k-elf-toolchain): New variable. Change-Id: Iaf7ed60dbbe116a5efbad8e94be9b2dee51faf15
2024-01-22gnu: cross-gcc-toolchain: Use fixed name.Jean-Pierre De Jesus DIAZ
* gnu/packages/cross-base.scm (cross-gcc-toolchain) <name>: Always use gcc-cross- prefix regardless of TARGET having a C standard library or not. Change-Id: I5cbe89c61e5bd324a385db17c27131ea5ef75669
2024-01-22guix: Add ork1-elf platform.Jean-Pierre De Jesus DIAZ
* doc/guix.texi: Document or1k-elf platform. * guix/platforms/or1k.scm (or1k-elf): New variable. * Makefile.am (MODULES): Add guix/platforms/or1k.scm. Change-Id: I3f71a0fa97f1ebd2bbdbf6cd00a93b477a123648
2024-01-22gnu: emacs-orgalist: Fix build.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-orgalist)[source]<origin>: Use correct extension. Change-Id: Idea5aa97de9838b4a7bfabd7e7609727bd925a71
2024-01-22gnu: notmuch: Update to 0.38.2.Nicolas Goaziou
* gnu/packages/mail.scm (notmuch): Update to 0.38.2. * gnu/packages/patches/notmuch-emacs-test-output.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Apply file deletion. Change-Id: I60d0487f2258ed5ef8602de7a624686c5f012a4f
2024-01-22gnu: emacs-ebdb: Fix build.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-ebdb)[propagated-inputs]: Add EMACS-ORG-ROAM. Change-Id: I77c2373dcc50ed4a832bf1d493c44eb0b96ebc7b
2024-01-21gnu: cambalache: Fix buld.Sharlatan Hellseher
As seen in http://ci.guix.gnu.org/build/3338535/log/raw. * gnu/packages/gnome.scm (cambalache): Fix build. [inputs]: Swap duplicated webkitgtk to webkitgtk-for-gtk3. Change-Id: I9604159d3aa343e0bcb539cfade520ddd97cb489
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