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2019-08-07gnu: r-dt: Update to 0.8....* gnu/packages/statistics.scm (r-dt): Update to 0.8. [propagated-inputs]: Add r-jsonlite. Ricardo Wurmus
2019-08-07gnu: r-epi: Update to 2.38....* gnu/packages/cran.scm (r-epi): Update to 2.38. Ricardo Wurmus
2019-08-07gnu: r-ggpubr: Update to 0.2.2....* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.2. [propagated-inputs]: Add r-rlang. Ricardo Wurmus
2019-08-07gnu: r-tinytex: Update to 0.15....* gnu/packages/cran.scm (r-tinytex): Update to 0.15. Ricardo Wurmus
2019-08-07gnu: r-servr: Update to 0.15....* gnu/packages/cran.scm (r-servr): Update to 0.15. Ricardo Wurmus
2019-08-07gnu: dolphin-emu: Update to commit 24718c1....* gnu/packages/emulators.scm (dolphin-emu): Update to commit 24718c1. Rutger Helling
2019-08-07gnu: linux-libre: Update to 5.2.7....* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7. (linux-libre-5.2-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-07gnu: linux-libre@4.19: Update to 4.19.65....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65. (linux-libre-4.19-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-07gnu: linux-libre@4.14: Update to 4.14.137....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137. (linux-libre-4.14-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-07gnu: linux-libre@4.9: Update to 4.9.188....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188. (linux-libre-4.9-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-07gnu: linux-libre@4.4: Update to 4.4.188....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188. (linux-libre-4.4-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-06gnu: r-ggplotify: Update to 0.0.4....* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4. Ricardo Wurmus
2019-08-06gnu: r-bayestestr: Update to 0.2.5....* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5. Ricardo Wurmus
2019-08-06machine: Implement safety checks....* gnu/machine/ssh.scm (machine-check-file-system-availability) (machine-check-initrd-modules, check-deployment-sanity): New variable. (deploy-managed-host): Perform safety checks before deploying. Jakob L. Kreuze
2019-08-06reconfigure: Fix GC root installation....Fixes <https://bugs.gnu.org/36942>. Reported by ison <ison@airmail.cc>. guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch new symlink to the canonical bootloader configuration file. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Jakob L. Kreuze
2019-08-06machine: Rename 'system' field....* gnu/machine.scm (machine-system): Delete variable. (machine-operating-system): New variable. All callers changed. * doc/guix.texi (Invoking guix deploy): Use the 'machine-operating-system' accessor rather than 'machine-system'. Jakob L. Kreuze
2019-08-06doc: Add note about signing keys....* doc/guix.texi (Invoking guix deploy): Add note explaining that deployment targets must authorize the coordinator machine's signing key. Jakob L. Kreuze
2019-08-06gnu: perl-hash-merge: Change inputs to propagated-inputs....Clone::Choose is required at runtime, so this input needs to be propagated. This change fixes the sqitch package. * gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to propagated-inputs. Christopher Baines
2019-08-06gnu: ffmpeg: Update to 4.2....* gnu/packages/video.scm (ffmpeg): Update to 4.2. [inputs]: Add dav1d. * gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance. Rutger Helling
2019-08-06gnu: r-rsubread: Update to 1.34.6....* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6. Ricardo Wurmus
2019-08-06gnu: r-abaenrichment: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1. Ricardo Wurmus
2019-08-06gnu: r-atacseqqc: Update to 1.8.5....* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5. Ricardo Wurmus
2019-08-06gnu: r-genomicinteractions: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1. Ricardo Wurmus
2019-08-06gnu: r-chippeakanno: Update to 3.18.2....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2. Ricardo Wurmus
2019-08-06gnu: r-msnid: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1. Ricardo Wurmus
2019-08-06gnu: r-rcas: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1. Ricardo Wurmus
2019-08-06gnu: r-genomicfeatures: Update to 1.36.4....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4. Ricardo Wurmus
2019-08-06gnu: r-rtracklayer: Update to 1.44.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2. Ricardo Wurmus
2019-08-06gnu: r-summarizedexperiment: Update to 1.14.1....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1. Ricardo Wurmus
2019-08-06gnu: r-biomart: Update to 2.40.3....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3. Ricardo Wurmus
2019-08-06gnu: r-limma: Update to 3.40.6....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6. Ricardo Wurmus
2019-08-06gnu: r-edger: Update to 3.26.6....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.6. Ricardo Wurmus
2019-08-06gnu: r-xgboost: Update to 0.90.0.2....* gnu/packages/cran.scm (r-xgboost): Update to 0.90.0.2. Ricardo Wurmus
2019-08-06gnu: r-citr: Update to 0.3.1....* gnu/packages/cran.scm (r-citr): Update to 0.3.1. [propagated-inputs]: Remove r-bibtex. Ricardo Wurmus
2019-08-06gnu: r-enrichr: Update to 2.0....* gnu/packages/cran.scm (r-enrichr): Update to 2.0. Ricardo Wurmus
2019-08-06gnu: r-dalex: Update to 0.4.4....* gnu/packages/cran.scm (r-dalex): Update to 0.4.4. Ricardo Wurmus
2019-08-06gnu: r-bookdown: Update to 0.12....* gnu/packages/cran.scm (r-bookdown): Update to 0.12. Ricardo Wurmus
2019-08-06gnu: r-ldheatmap: Update to 0.99-7....* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-7. [propagated-inputs]: Add r-rcpp. Ricardo Wurmus
2019-08-06gnu: r-sf: Update to 0.7-7....* gnu/packages/cran.scm (r-sf): Update to 0.7-7. Ricardo Wurmus
2019-08-06gnu: r-deldir: Update to 0.1-23....* gnu/packages/cran.scm (r-deldir): Update to 0.1-23. Ricardo Wurmus
2019-08-06gnu: r-classint: Update to 0.4-1....* gnu/packages/cran.scm (r-classint): Update to 0.4-1. Ricardo Wurmus
2019-08-06gnu: r-rematch2: Update to 2.1.0....* gnu/packages/cran.scm (r-rematch2): Update to 2.1.0. Ricardo Wurmus
2019-08-06gnu: r-irkernel: Update to 1.0.2....* gnu/packages/cran.scm (r-irkernel): Update to 1.0.2. Ricardo Wurmus
2019-08-06gnu: r-lavaan: Update to 0.6-4....* gnu/packages/cran.scm (r-lavaan): Update to 0.6-4. Ricardo Wurmus
2019-08-06gnu: r-bayesm: Update to 3.1-3....* gnu/packages/cran.scm (r-bayesm): Update to 3.1-3. Ricardo Wurmus
2019-08-06gnu: r-rsvd: Update to 1.0.2....* gnu/packages/cran.scm (r-rsvd): Update to 1.0.2. Ricardo Wurmus
2019-08-06gnu: r-future: Update to 1.14.0....* gnu/packages/cran.scm (r-future): Update to 1.14.0. Ricardo Wurmus
2019-08-06gnu: r-spatialextremes: Update to 2.0-7.2....* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-7.2. Ricardo Wurmus
2019-08-06gnu: r-bigrquery: Update to 1.2.0....* gnu/packages/cran.scm (r-bigrquery): Update to 1.2.0. [propagated-inputs]: Add r-gargle and r-rlang. Ricardo Wurmus
2019-08-06gnu: Add r-gargle....* gnu/packages/cran.scm (r-gargle): New variable. Ricardo Wurmus
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