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2023-09-14gnu: uncrustify: Update to 0.77.1.Zheng Junjie
* gnu/packages/code.scm (uncrustify): Update to 0.77.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: makefile2graph: fix cross-compile.Zheng Junjie
* gnu/packages/code.scm (makefile2graph): fix cross-compile. [arguments]: Use gexp and CC-FOR-TARGET. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: openmpi: Enable PMIx.Lars Bilke
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass “--with-pmix=internal”. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14doc: Make “crash course” xref more visible.Ludovic Courtès
* doc/guix.texi (Using the Configuration System): Move the “Do not panic” note right after the first example. Clarify wording.
2023-09-14gnu: npiet: Use gexps.Zheng Junjie
* gnu/packages/piet.scm (npiet): Use Gexp. [arguments]: Use Gexp and remove tail #t. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: npiet: Fix cross-compilation.Zheng Junjie
* gnu/packages/piet.scm (npiet)[arguments]<#:phases>: Use SEARCH-INPUT-FILE replace WHICH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: rottlog: Add gawk as an input.Skyler
This avoids an issue where rottlog will delete the entire /tmp directory if gawk is not installed. See <https://issues.guix.gnu.org/65793>. * gnu/packages/admin.scm (rottlog): Add gawk input, also update the patch-paths build phase for awk invocations. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: neofetch: Fix cross-compiling.Zheng Junjie
* gnu/packages/admin.scm (neofetch): Fix cross-compiling. [arguments]: Use Gexp. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: tor: Update to 0.4.8.5.fanquake
* gnu/packages/tor.scm (tor): Update to 0.4.8.5. * gnu/packages/tor.scm (tor)[arguments]<#:configure-flags>: Add "--enable-gpl". * gnu/packages/patches/tor-remove-defensive-assert.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/tor.scm (tor)[source]: Add patch to remove defensive assert. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: syncthing: Update to 1.23.7.Timotej Lazar
The uraggregate binary was merged into ursrv, so don’t attempt to install it. * gnu/packages/syncthing.scm (syncthing): Update to 1.23.7. [arguments]: Build with go-1.20. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: Add stklos.Ramin Honary
* gnu/packages/scheme.scm (stklos): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14home: services: redshift: Use redshift package specified in configurationKjartan Oli Agustsson
* gnu/home/services/desktop.scm (redshift-shepherd-service): Use the redshift package specified by config. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-14gnu: python-requests_ntlm: Update to 1.2.0.c4droid
* gnu/packages/python-web.scm (python-requests_ntlm): Update to 1.2.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-09-14gnu: perl-cworld-dekker: Drop labels from inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use G-expression and avoid references to labeled inputs. [inputs]: Drop labels.
2023-09-14gnu: dpkg: Update to 1.22.0.Efraim Flashner
* gnu/packages/debian.scm (dpkg): Update to 1.22.0. [arguments]: Wrap another script in the custom 'wrap-scripts phase.
2023-09-14gnu: debootstrap: Hardcode location of archive keyrings.Efraim Flashner
* gnu/packages/debian.scm (debootstrap)[arguments]: Adjust custom 'patch-source phase to hardcode the location of the archive keyrings.
2023-09-14gnu: debootstrap: Update to 1.0.132.Efraim Flashner
* gnu/packages/debian.scm (debootstrap): Update to 1.0.132.
2023-09-14gnu: r-delayedmatrixstats: Update to 1.22.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.6.
2023-09-14gnu: r-rhdf5lib: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.1.
2023-09-14gnu: r-s4arrays: Update to 1.0.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.6.
2023-09-14gnu: r-clusterprofiler: Update to 4.8.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.3.
2023-09-14gnu: r-greylistchip: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.1.
2023-09-14gnu: r-tcgautils: Update to 1.20.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.20.4. [propagated-inputs]: Add r-biocbaseutils.
2023-09-14gnu: r-shinymethyl: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.1.
2023-09-14gnu: r-genomicdatacommons: Update to 1.24.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.24.3. [propagated-inputs]: Add r-tidyr.
2023-09-14gnu: r-genomeinfodb: Update to 1.36.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.3.
2023-09-14gnu: libwebp: Replace with 1.3.2. [fixes CVE-2023-4863]Julien Lepiller
* gnu/packages/image.scm (libwebp/fixed): Update to 1.3.2.
2023-09-14gnu: r-reghelper: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-reghelper): Update to 1.1.2. [propagated-inputs]: Add r-rlang.
2023-09-14gnu: r-desctools: Update to 0.99.50.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.50.
2023-09-14gnu: r-lmom: Update to 3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lmom): Update to 3.0.
2023-09-14gnu: r-deoptimr: Update to 1.1-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-2.
2023-09-14gnu: r-rematch: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rematch): Update to 2.0.0.
2023-09-14gnu: r-rcpparmadillo: Update to 0.12.6.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.4.0.
2023-09-14gnu: r-dplyr: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.3.
2023-09-14gnu: r-knitr: Update to 1.44.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.44.
2023-09-14gnu: r-labeling: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-labeling): Update to 0.4.3.
2023-09-14gnu: r-foreign: Update to 0.8-85.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-85.
2023-09-14gnu: r-ggh4x: Update to 0.2.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.6.
2023-09-14gnu: r-mlearning: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlearning): Update to 1.2.1. [propagated-inputs]: Add r-rpart.
2023-09-14gnu: r-paws-compute: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-compute): Update to 0.4.0.
2023-09-14gnu: r-paws-storage: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-storage): Update to 0.4.0.
2023-09-14gnu: r-paws-database: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-database): Update to 0.4.0.
2023-09-14gnu: r-paws-networking: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-networking): Update to 0.4.0.
2023-09-14gnu: r-paws-management: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-management): Update to 0.4.0.
2023-09-14gnu: r-paws-machine-learning: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.4.0.
2023-09-14gnu: r-paws-analytics: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.4.0.
2023-09-14gnu: r-paws-security-identity: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.4.0.
2023-09-14gnu: r-paws-application-integration: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.4.0.
2023-09-14gnu: r-paws-end-user-computing: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.4.0.
2023-09-14gnu: r-paws-developer-tools: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.4.0.
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