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2018-07-03gnu: pigx-rnaseq: Update to 0.0.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.4. [arguments]: Remove "wrap-executable" phase.
2018-07-03gnu: pigx-chipseq: Update to 0.0.20.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.20.
2018-07-03gnu: ikiwiki: Include auto setup files in output.Paul Garlick
* gnu/packages/web.scm(ikiwiki)[arguments]: Add patch-Makefile phase. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-03gnu: emacs-use-package: Update to commit da8c9e2.Peter Mikkelsen
This update is needed because the release tarball from github does not contain all the files needed for us to build the package. * gnu/packages/emacs.scm (emacs-use-package): Update to commit da8c9e2. [source]: change to git. [arguments]: Enable tests. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-03gnu: Add emacs-atom-one-dark-theme.Peter Mikkelsen
* gnu/packages/emacs.scm (emacs-atom-one-dark-theme): New variable Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-03gnu: libuninameslist: Update to 20180701.Marius Bakke
* gnu/packages/fontutils.scm (libuninameslist): Update to 20180701. [source]: Change URI to use release tarball. Remove FILE-NAME. [native-inputs]: Remove.
2018-07-03gnu: libuninameslist: Correct license.Marius Bakke
* gnu/packages/fontutils.scm (libuninameslist)[license]: Remove GPL2. Add BSD-3 and X11-STYLE.
2018-07-03gnu: Add vsftpd.Danny Milosavljevic
* gnu/packages/ftp.scm (vsftpd): New variable.
2018-07-03gnu: vkd3d: Add vulkan-headers.Rutger Helling
* gnu/packages/vulkan.scm (vkd3d)[inputs]: Add vulkan-headers.
2018-07-03gnu: vkquake: Add vulkan-headers.Rutger Helling
* gnu/packages/games.scm (vkquake)[inputs]: Add vulkan-headers.
2018-07-03gnu: mpv: Add vulkan-headers.Rutger Helling
* gnu/packages/video.scm (mpv)[inputs]: Add vulkan-headers.
2018-07-03gnu: vulkan-loader: Update to 1.1.77.0.Rutger Helling
* gnu/packages/vulkan.scm (vulkan-loader): Update to 1.1.77.0. [inputs]: Add 'vulkan-headers. [home-page]: Correct URL.
2018-07-03gnu: Add vulkan-headers.Rutger Helling
* gnu/packages/vulkan.scm (vulkan-headers): New variable.
2018-07-03gnu: openrct2: Update to 0.2.0.Rutger Helling
* gnu/packages/games.scm (openrct2): Update to 0.2.0. [configure-flags]: Add -DDOWNLOAD_OBJECTS=OFF configure flag. [arguments]: Add 'fixgcc7, 'get-rid-of-errors phases. [native-inputs]: Add gcc@7.
2018-07-03gnu: dolphin-emu: Update to commit 806c1ee.Rutger Helling
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 806c1ee. [source]: Don't delete removed externals. [arguments]: Remove unused variables. [inputs]: Add 'pugixml. Remove 'wxwidgets-gtk2-3.1.
2018-07-03gnu: Add keynav.Oleg Pykhalov
* gnu/packages/xorg.scm (keynav): New variable.
2018-07-03import: elpa: Check if 'fetch-elpa-package' rest argument is null.Oleg Pykhalov
* guix/import/elpa.scm (fetch-elpa-package): Check if 'rest' is null.
2018-07-03bash completion: Complete files names after 'guix weather -m'.Oleg Pykhalov
* etc/completion/bash/guix (_guix_complete): Complete files names after 'guix weather -m'.
2018-07-03bash completion: Complete files names after 'guix build -L'.Oleg Pykhalov
* etc/completion/bash/guix (_guix_complete): Complete files names after 'guix build -L'.
2018-07-02gnu: units: Update to 2.17.Kei Kebreau
* gnu/packages/maths.scm (units): Update to 2.17.
2018-07-03gnu: icedtea Work around gcc segfault.Gábor Boskovits
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add icedtea-7 patch to hotspot.
2018-07-02gnu: libgit2: Update to 0.26.4 [fixes CVE-2018-11235].Leo Famulari
* gnu/packages/version-control.scm (libgit2): Update to 0.26.4. (source): Adjust patch name. * gnu/packages/patches/libgit2-0.25.1-mtime-0.patch: Rename to ... * gnu/packages/patches/libgit2-mtime-0.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-07-03gnu: icedtea: Work around gcc segfault.Gábor Boskovits
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Add patch to hotspot. * gnu/packages/patches/icedtea-7-hotspot-gcc-segfault-workaround.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-03deduplication: Place link files under /gnu/store/.links.Ludovic Courtès
Previously they'd always be placed next to TO-REPLACE, which would lead to EPERM in some cases. * guix/store/deduplication.scm (replace-with-link): Add #:swap-directory parameter and honor it. Add call to 'make-file-writable'. Catch 'system-error' around 'rename-file'. (deduplicate): Pass #:swap-directory and remove uses of 'false-if-system-error'. * tests/store-deduplication.scm ("deduplicate"): Add 'chmod' call.
2018-07-03deduplication: Fix incorrect use of 'throw'.Ludovic Courtès
* guix/store/deduplication.scm (get-temp-link): In handler, fix call to 'throw'.
2018-07-03guix system: init: Check the available space before copying.Ludovic Courtès
* guix/scripts/system.scm (copy-closure): Call 'query-path-info*' on TO-COPY and REFS. Compute the total size. Call 'check-available-space'.
2018-07-03ui: Make 'check-available-space' public.Ludovic Courtès
* guix/ui.scm (check-available-space): Add optional 'directory' parameter, defaulting to (%store-prefix). Honor it. Make public.
2018-07-03store: Add 'query-path-info*'.Ludovic Courtès
* guix/scripts/size.scm (query-path-info*): Move to... * guix/store.scm (query-path-info*): ... here.
2018-07-03packages: Optimize 'package-transitive-supported-systems'.Ludovic Courtès
This version is 13% faster than the one above when timing: (fold-packages (lambda (p x) (package-transitive-supported-systems p)) '()) * guix/packages.scm (package-transitive-supported-systems): Make 'systems' a set instead of calling 'lset-intersection' repeatedly.
2018-07-02gnu: python-duniterpy: Change module.Nicolas Goaziou
* gnu/packages/python-crypto.scm (python-duniterpy): Move... * gnu/packages/finance.scm: ... here.
2018-07-02gnu: python-pylibscrypt: Improve speed.Nicolas Goaziou
* gnu/packages/python-crypto.scm (python-pylibscrypt): Use "libscrypt" implementation instead of "openssl". "hashlib.scrypt" requires Python 3.6+ and OpenSSL 1.1+. Since Python is built with OpenSSL 1.0, the library is unavailable. "pylibscrypt" defaults to a slow pure Python implementation. Instead, rely on the much faster "libscrypt".
2018-07-02gnu: Add libscrypt.Nicolas Goaziou
* gnu/packages/crypto.scm (libscrypt): New variable.
2018-07-02gnu: Add freedink-dfarc.Kei Kebreau
* gnu/packages/games.scm (freedink-dfarc): New variable.
2018-07-02gnu: bambam: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/games.scm (bambam)[source]: Use GIT-FETCH.
2018-07-02gnu: zstd: Update to 1.3.5.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (zstd): Update to 1.3.5. [source]: Add two patches to make the test suite pass. * gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch, gnu/packages/patches/zstd-fix-stdin-list-test.patch: New files. * gnu/local.mk (dist_patch_DATA): Add both.
2018-07-02gnu: acpica: Update to 20180629.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (acpica): Update to 20180629.
2018-07-02gnu: Remove duplicate imports from (gnu packages graphics).Tobias Geerinckx-Rice
* gnu/packages/graphics.scm (define-module): Remove duplicate module imports. Order the remainers alphabetically.
2018-07-02gnu: bambam: Update to 0.6.Tobias Geerinckx-Rice
* gnu/packages/games.scm (bambam): Update to 0.6.
2018-07-02gnu: teeworlds: Add missing dependency.Tim Gesthuizen
* gnu/packages/games.scm (teeworlds)[native-inputs]: Add pkg-config. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-07-02gnu: Add silkaj.Nicolas Goaziou
* gnu/packages/finance.scm (silkaj): New variable.
2018-07-02gnu: Add python-scrypt.Nicolas Goaziou
* gnu/packages/python-crypto.scm (python-scrypt): New variable.
2018-07-02gnu: Add python-commandlines.Nicolas Goaziou
* gnu/packages/python.scm (python-commandlines): New variable.
2018-07-02gnu: java-hamcrest-all: Add java-hamcrest-core to inputs.Ricardo Wurmus
Fixes <https://debbugs.gnu.org/31390>, probably. * gnu/packages/java.scm (java-hamcrest-all)[inputs]: Add java-hamcrest-core. [arguments]: Add java-hamcrest-core to the build-time classpath.
2018-07-02self: Build with Guile 2.2.4.Ludovic Courtès
* guix/self.scm (guile-for-build): In the "2.2" case, choose GUILE-2.2.4.
2018-07-02self: Use #:guile-for-build in the shebang of the 'guix' executable.Ludovic Courtès
* guix/self.scm (guix-command): Add #:guile and pass it to 'program-file'. (whole-package): Add #:guile and pass it to 'guix-command'. (compiled-guix): Pass #:guile to 'guix-command' and 'whole-package'.
2018-07-02utils: Micro-optimize 'source-properties->location'.Ludovic Courtès
* guix/utils.scm (source-properties->location): Destructure LOC with 'match', adding a fast path without 'assq-ref' calls.
2018-07-02utils: Disable memoization for 'location'.Ludovic Courtès
This was getting 25% hits, which did not quite justify the overhead. * guix/utils.scm (location): Remove 'mlambda'.
2018-07-02gnu: guile: Add version 2.2.4.Ludovic Courtès
* gnu/packages/guile.scm (guile-2.2.4): New variable.
2018-07-02gnu: icedtea: Work around gcc segfault.Gábor Boskovits
* gnu/packages/java.scm (icedtea-6)[arguments]: Modify phases to extract hostspot, as after the patching it becomes an archive. [native-inputs]: add patch to hotspot-src. * gnu/packages/patches/icedtea-6-hotspot-gcc-segfault-workaround.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-07-02Revert "gnu: icedtea-7: Build with gcc-4.9."Gábor Boskovits
This reverts commit bc73f673e80e9134ee7620516f2e29c0c46db35f.
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