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2023-10-17scripts: substitute: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/substitute.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: system: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/system.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: style: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/style.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: size: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/size.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: show: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/show.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: shell: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/shell.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: search: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/search.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: repl: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/repl.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: remove: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/remove.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: refresh: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/refresh.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: pull: Handle EPIPE errors when displaying help.Simon Tournier
Reported by Mathieu Othacehe <othacehe@gnu.org>. * guix/scripts/pull.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: publish: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/publish.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: processes: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/processes.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: package: Handle EPIPE errors when displaying help.Simon Tournier
Reported by Mathieu Othacehe <othacehe@gnu.org>. * guix/scripts/package.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: pack: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/pack.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: offload: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/offload.scm (guix-offload): Handle EPIPE errors when displaying help.
2023-10-17scripts: locate: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/locate.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: lint: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/lint.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: install: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/install.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: import: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/import.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: home: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/home.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: hash: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/hash.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: graph: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/graph.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: git: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/git.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: gc: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/gc.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: edit: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/edit.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: download: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/download.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: discover: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/discover.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: describe: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/describe.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: deploy: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/deploy.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: copy: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/copy.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: container: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/container.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: challenge: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/challenge.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: build: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/build.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17scripts: archive: Handle EPIPE errors when displaying help.Simon Tournier
* guix/scripts/archive.scm (%options): Handle EPIPE errors when displaying help.
2023-10-17ui: Handle EPIPE errors when displaying Guix version.Simon Tournier
Fixes <https://issues.guix.gnu.org/66254>. Reported by Clément Lassieur <clement@lassieur.org>. * guix/ui.scm (show-version-and-exit): Handle EPIPE errors when displaying version.
2023-10-17gnu: Add r-metacell.Afkhami, Navid
* gnu/packages/bioinformatics.scm (r-metacell): New variable.
2023-10-17gnu: Add r-tgutil.Afkhami, Navid
* gnu/packages/statistics.scm (r-tgutil): New variable.
2023-10-17gnu: r-tgstat: Update to 2.3.24.Afkhami, Navid
* gnu/packages/statistics.scm (r-tgstat): Delete variable. * gnu/packages/cran.scm (r-tgstat): Add updated variable here. [native-inputs]: Add r-knitr. [propagated-inputs]: Remove r-rcpp. [arguments]: Remove fix-isnan phase.
2023-10-17gnu: r-tgconfig: Update to 0.1.2-1.15cf199.Afkhami, Navid
* gnu/packages/statistics.scm (r-tgconfig): Update to 0.1.2-1.15cf199. [source]: Fetch from github. [properties]: Add field. [home-page]: Use new URL. [description]: Expand. [license]: Use GPLv3 or later.
2023-10-17gnu: r-svglite: Update to 2.1.2.Afkhami, Navid
* gnu/packages/statistics.scm (r-svglite): Update to 2.1.2. [properties]: Add field. [home-page]: Do not use repository URL.
2023-10-17gnu: singularity: Do not override PATH.Ricardo Wurmus
* gnu/packages/linux.scm (singularity)[arguments]: Prepend coreutils, but don't make it impossible to pick up other tools.
2023-10-17gnu: singularity: Modernize package definition.Ricardo Wurmus
* gnu/packages/linux.scm (singularity)[source]: Remove trailing #t from snippet. [arguments]: Use G-expressions; remove trailing #t from build phases. [inputs]: Drop labels; add coreutils.
2023-10-17gnu: guix-build-coordinator: Update to 0-90.3446355.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-90.3446355.
2023-10-17gnu: mympd: Update to 12.1.0.Bruno Victal
* gnu/packages/mpd.scm (mympd): Update to 12.1.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17gnu: nomad-optimizer: Update to 4.3.1.Paul A. Patience
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.3.1. [native-inputs]: Remove python-wrapper and python-cython. Add openmpi. [arguments]: Use G-expressions. Remove #:imported-modules and #:modules. <#:configure-flags>: Remove -DBUILD_INTERFACE_PYTHON=ON. <#:phases>: Remove 'fix-sources-for-build' phase. Rename 'fix-sources-for-tests' phase to 'fix-tests' and update it. Add 'mpi-setup' phase. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17gnu: irssi: Update to 1.4.5.André Batista
* gnu/packages/irc.scm (irssi): Update to 1.4.5. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17gnu: mmg: Update to 5.7.2.Paul A. Patience
* gnu/packages/graphics.scm (mmg): Update to 5.7.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17gnu: python-trimesh: Update to 3.23.5.Paul A. Patience
* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17gnu: python-pyvista: Update to 0.42.3.Paul A. Patience
* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3. Signed-off-by: Christopher Baines <mail@cbaines.net>
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