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2016-11-11gnu: r-org-dm-eg-db: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
2016-11-11gnu: r-org-ce-eg-db: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11gnu: r-org-hs-eg-db: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11gnu: linux-libre@4.4: Update to 4.4.31.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11gnu: linux-libre: Update to 4.8.7.Leo Famulari
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.8.7.
2016-11-11gnu: Add guile-aspell.Ludovic Courtès
* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.Ludovic Courtès
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove -fno-builtin-strcpy. [native-inputs]: New field.
2016-11-10gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].Leo Famulari
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10gnu: r-rmarkdown: Remove phase "copy-files-without-mode".Ricardo Wurmus
This phase is no longer needed as upstream has merged the fix in the current release. * gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build phase "copy-files-without-mode".
2016-11-10gnu: inkscape: Use modify-phases syntax.Ricardo Wurmus
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases syntax.
2016-11-10gnu: vim: Update to 8.0.0073.Marius Bakke
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10container: Pass a list of <file-system> objects as things to mount.Ludovic Courtès
* gnu/build/linux-container.scm (mount-file-systems): 'mounts' is now a list of <file-system> objects instead of a list of lists ("specs"). Add call to 'file-system->spec' as the argument to 'mount-file-system'. (run-container, call-with-container): Adjust docstring accordingly. * gnu/system/file-systems.scm (spec->file-system): New procedure. * gnu/system/linux-container.scm (container-script)[script]: Call 'spec->file-system' inside gexp. * guix/scripts/environment.scm (launch-environment/container): Remove call to 'file-system->spec'. * tests/containers.scm ("call-with-container, mnt namespace") ("call-with-container, mnt namespace, wrong bind mount"): Pass a list of <file-system> objects.
2016-11-10linux-container: Use 'source-module-closure' when generating the script.Ludovic Courtès
* gnu/system/linux-container.scm (container-script)[script]: Use 'source-module-closure' in 'with-imported-modules' form.
2016-11-10gnu: guix: Update development snapshot.Ludovic Courtès
* gnu/packages/package-management.scm (guix-devel): Update to commit 324a2ba56c2f4c0d91567ed08024ae2c492f3b23.
2016-11-10gnu: gmsh: Update to 2.14.1Paul Garlick
* gnu/packages/maths.scm (gmsh): Update to 2.14.1. [source]: Use new uri. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10gnu: milkytracker: Update upstream location.Marius Bakke
* gnu/packages/music.scm (milkytracker)[source]: Update source uri. [home-page]: Change to new domain. Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10gnu: imagemagick: Update to 6.9.6-4.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
2016-11-10gnu: claws-mail: Update to 3.14.1.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
2016-11-10gnu: Add pdfposter.Hartmut Goebel
* gnu/packages/pdf.scm(pdfposter): New variable.
2016-11-10gnu: Add python2-pypdf.Hartmut Goebel
* gnu/packages/pdf.scm (python2-pypdf): New variable.
2016-11-10gnu: Add python-pypdf2.Hartmut Goebel
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
2016-11-10tests: Adjust 'url-fetch' mocks to TLS changes.Ludovic Courtès
This is a followup to bc3c41ce36349ed4ec758c70b48a7059e363043a. * tests/cpan.scm ("cpan->guix-package"): Add #:verify-certificate? parameter in 'url-fetch' mock. * tests/cran.scm ("description->package"): Likewise.
2016-11-09gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings.Ludovic Courtès
Partly addresses <http://bugs.gnu.org/24703>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/patches/gcc-strmov-store-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it. (gcc-6)[sources](patches): Add it.
2016-11-09lint: 'cve' checker catches 'tls-certificate-error'.Ludovic Courtès
Reported by Frederick Muriithi <fredmanglis@gmail.com>. * guix/scripts/lint.scm (tls-certificate-error-string): New procedure. (validate-uri): Use it. (current-vulnerabilities*): Catch 'tls-certificate-error' and print a warning.
2016-11-09gnu: Add kdevelop-pg-qt.Thomas Danckaert
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09gnu: Add libkomparediff2.Thomas Danckaert
* gnu/packages/kde.scm (libkomparediff2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09gnu: hidapi: Fix 'license'.Ludovic Courtès
* gnu/packages/libusb.scm (hidapi)[license]: Actually call 'non-copyleft'.
2016-11-09doc: Mention elpa.gnu.org package signatures.Ludovic Courtès
* doc/guix.texi (Invoking guix import): Document elpa.gnu.org signatures.
2016-11-09gnu: Add vifm.Efraim Flashner
* gnu/packages/vim.scm (vifm): New variable.
2016-11-09gnu: libxslt: Fix CVE-2016-4738.Leo Famulari
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xml.scm (libxslt)[replacement]: New field. (libxslt/fixed): New variable.
2016-11-09gnu: postgresql: Update to 9.5.5.Efraim Flashner
* gnu/packages/databases.scm (postgresql): Update to 9.5.5. [home-page]: Use https.
2016-11-09gnu: mariadb: Update to 10.1.19.Efraim Flashner
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
2016-11-09gnu: gnome-calculator: Update to 3.22.2.Ludovic Courtès
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.22.2.
2016-11-08gnu: gcc-arm-none-eabi-4.9: Remove non-applicable patch.Ludovic Courtès
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)[patches]: Remove "gcc-arm-bug-71399.patch" from XGCC's patches.
2016-11-08tests: Fix 'fold-packages' for hidden packages.Ludovic Courtès
* tests/packages.scm ("fold-packages, hidden package"): Expect GUILE-2.0, not GUILE-2.0/FIXED. This is a followup to c62a31ca802c2b225279c4b0360a4cfc2723ad28.
2016-11-08system: Reintroduce 'GUIX_LOCPATH', for compatibility with glibc@2.23.Ludovic Courtès
* gnu/system.scm (operating-system-environment-variables): Re-add 'GUIX_LOCPATH'. This reverts part of 9f58fe3d1c32e3f0ced065e286532a10cad1b5e3.
2016-11-08gnu: mate-themes: Update to 3.20.9.Efraim Flashner
* gnu/packages/mate.scm (mate-themes): Update to 3.20.9. [source]: Update package location. [inputs]: Remove gtk+-2, add gtk+-3. [description]: Add note about dual gtk+-2/gtk+-3 support.
2016-11-08gnu: mate-menus: Update to 1.16.0.Efraim Flashner
* gnu/packages/mate.scm (mate-menus): Update to 1.16.0. [propagated-inputs]: Move glib ... [inputs]: ... to here.
2016-11-08gnu: Add pam-krb5 service.John Darrington
* doc/guix.texi (Kerberos Services): New node. * gnu/services/kerberos.scm: New file. * gnu/local.mk: Add it.
2016-11-08gnu: mate-desktop: Update to 1.16.1.Efraim Flashner
* gnu/packages/mate.scm (mate-desktop): Update to 1.16.1. [arguments]: Build with gtk+-3, enable mpaste. [propagated-inputs]: Remove gtk+-2, move libxrandr, startup-notification ... [inputs]: ... to here. Add gtk+-3, python-2.
2016-11-08gnu: mate-icon-theme: Update to 1.16.0.Efraim Flashner
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.16.0.
2016-11-08gnu: libmateweather: Update to 1.16.1.Efraim Flashner
* gnu/packages/mate.scm (libmateweather): Update to 1.16.1. [arguments]: Build with gtk+-3. [propagated-inputs]: Remove gtk+-2, move gdk-pixbuf ... [inputs]: ... to here. Add gtk+-3.
2016-11-08gnu: Add faust-2.Ricardo Wurmus
* gnu/packages/audio.scm (faust-2): New variable.
2016-11-08gnu: Add LLVM variant with RTTI support.Ricardo Wurmus
* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
2016-11-08gnu: python-tempest-lib: Update to 1.0.0.Marius Bakke
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0. [home-page]: Use HTTPS.
2016-11-08gnu: python-os-testr: Update to 0.8.0.Marius Bakke
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update to 0.8.0. [home-page]: Use HTTPS.
2016-11-08gnu: python-jsonschema: Correct inputs.Marius Bakke
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove python-setuptools. Move python-vcversioner to ... [native-inputs]: ... here. * gnu/packages/python.scm (python2-jsonschema)[inputs]: Move python2-functools32 to ... [propagated-inputs]: ... here. [native-inputs]: Add python2-setuptools.
2016-11-08gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}].Leo Famulari
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
2016-11-08gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3.Marius Bakke
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update to 1.5.3. [native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2. (python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
2016-11-08gnu: Add python-pytest-2.9.2.Leo Famulari
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
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