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2021-08-31gnu: python-scanpy: Propagate sinfo.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanpy)[native-inputs]: Move python-sinfo from here... [propagated-inputs]: ...to here.
2021-08-31gnu: python-jupyter-server: Use older pytest.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-jupyter-server)[native-inputs]: Replace python-pytest-6 with python-pytest.
2021-08-31gnu: python-anyio: Avoid failing tests.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anyio)[arguments]: Disable asyncio plugin, and explicitly disable network tests.
2021-08-31gnu: Remove python-pytest-mock-3.Ricardo Wurmus
* gnu/packages/check.scm (python-pytest-mock-3): Remove variable. * gnu/packages/python-xyz.scm (python-anyio)[native-inputs]: Replace python-pytest-mock-3 with python-pytest-mock.
2021-08-31gnu: telescope: Update to 0.5.1.cage
* gnu/packages/web-browsers.scm (telescope): Update to 0.5.1. [native-inputs]: Add pkg-config. Co-authored-by: Brice Waegeneire <brice@waegenei.re>
2021-08-31gnu: emacs-jenkinsfile-mode: Update to commit 65bf392.Maxim Cournoyer
* gnu/packages/emacs-xyz.scm (emacs-jenkinsfile-mode): Update to commit 65bf392.
2021-08-31gnu: emacs-groovy-modes: Update to version 2.1.Maxim Cournoyer
* gnu/packages/emacs-xyz.scm (emacs-groovy-modes): Update to version 2.1. [arguments]: Enable tests, running the test suite via 'ert-runner'. [native-inputs]: New field. [propagated-inputs]: Add emacs-dash.
2021-08-31gnu: Add h2c.Felix Gruber
* gnu/packages/curl.scm (h2c): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-08-31gnu: ledger-agent: Remove usage from description.Matthew James Kraai
* gnu/packages/finance.scm (ledger-agent)[description]: Remove usage. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-08-31gnu: kakoune: Update to v2021.08.28calum
* gnu/packages/text-editors.scm (kakoune): Update to v2021.08.28 [native-inputs]: Use gcc-10. [inputs]: Remove ncurses dependancy. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-08-31publish: Do not render the narinfo "System" field.Mathieu Othacehe
This has been discussed here: https://issues.guix.gnu.org/50040. * guix/scripts/publish.scm (narinfo-string): Do not render the "System" field that is expensive to compute and currently unused.
2021-08-31gnu: global: Add ctags support.Efraim Flashner
* gnu/packages/code.scm (global)[inputs]: Add bash-minimal, universal-ctags, python-pygments. [arguments]: Add configure-flags to find ctags. Add phases to install plugins and to wrap python script with PYTHONPATH.
2021-07-27gnu: linux-libre 4.4: Update to 4.4.282.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.282. (linux-libre-4.4-pristine-source): Update hash.
2021-07-27gnu: linux-libre 4.9: Update to 4.9.281.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.281. (linux-libre-4.9-pristine-source): Update hash.
2021-07-27gnu: linux-libre 4.14: Update to 4.14.245.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.245. (linux-libre-4.14-pristine-source): Update hash.
2021-07-27gnu: linux-libre 4.19: Update to 4.19.205.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.205. (linux-libre-4.19-pristine-source): Update hash.
2021-07-27gnu: linux-libre 5.4: Update to 5.4.143.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.143. (linux-libre-5.4-pristine-source): Update hash.
2021-07-27gnu: linux-libre 5.10: Update to 5.10.61.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.61. (linux-libre-5.10-pristine-source): Update hash.
2021-07-27gnu: linux-libre: Update to 5.13.13.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.13. (linux-libre-5.13-pristine-source, deblob-scripts-5.13): Update hash.
2021-08-30gnu: harmonist: Update to 0.4.1.Guix Together
* gnu/packages/games.scm (harmonist): Update to 0.4.1. [propagated-inputs]: Add go-github-com-gdamore-tcell-v2, go-github-com-anaseto-gruid, and go-github-com-anaseto-gruid-tcell. Co-authored-by: Arun Isaac <arunisaac@systemreboot.net> Co-authored-by: Brice Waegeneire <brice@waegenei.re> Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-30gnu: Add go-github-com-anaseto-gruid-tcell.Guix Together
* gnu/packages/games.scm (go-github-com-anaseto-gruid-tcell): New variable. Co-authored-by: Arun Isaac <arunisaac@systemreboot.net> Co-authored-by: Brice Waegeneire <brice@waegenei.re> Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-30gnu: Add go-github-com-anaseto-gruid.Guix Together
* gnu/packages/games.scm (go-github-com-anaseto-gruid): New variable. Co-authored-by: Arun Isaac <arunisaac@systemreboot.net> Co-authored-by: Brice Waegeneire <brice@waegenei.re> Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-30gnu: Add go-github-com-gdamore-tcell-v2.Guix Together
* gnu/packages/golang.scm (go-github-com-gdamore-tcell-v2): New variable. Co-authored-by: Arun Isaac <arunisaac@systemreboot.net> Co-authored-by: Brice Waegeneire <brice@waegenei.re> Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-30gnu: go-github-com-gdamore-tcell: Correct license to Apache 2.0.Maxim Cournoyer
* gnu/packages/golang.scm (go-github-com-gdamore-tcell) [license]: Correct from Expat to Apache 2.0.
2021-08-30build/jami-service: Fix range ends in account-fingerprint-rx.Maxime Devos
This broke compilation of Guix with guile@3.0.2 with: In procedure make-regexp: Invalid range end The fix is to replace [0-9A-f] with [0-9A-Fa-f]. * gnu/build/jami-service.scm (account-fingerprint-rx): Correct regexp. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-30gnu: Add python-coolbox.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-coolbox): New variable.
2021-08-30gnu: Add python-voila.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-voila): New variable.
2021-08-30gnu: python-scikit-learn: Update to 0.24.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.2. [arguments]: Remove trailing #t.
2021-08-30gnu: python-anndata: Fetch sources from git.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anndata)[source]: Fetch from git to include test data. [arguments]: Enable tests. Do not let setuptools_scm guess the version.
2021-08-30gnu: python-scanpy: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.1. [arguments]: Bulid with flit; update list of broken tests. [native-inputs]: Add python-flit and python-anndata:source.
2021-08-30gnu: Add python-jupyter-server.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-jupyter-server): New variable.
2021-08-30gnu: Add python-anyio.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anyio): New variable.
2021-08-30gnu: Add python-pytest-mock-3.Ricardo Wurmus
* gnu/packages/check.scm (python-pytest-mock-3): New variable.
2021-08-30gnu: Add python-pytest-tornasync.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-tornasync): New variable.
2021-08-30gnu: Add python-pytest-console-scripts.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-console-scripts): New variable.
2021-08-30gnu: Add python-dna-features-viewer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-dna-features-viewer): New variable.
2021-08-30gnu: Add python-svgutils.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-svgutils): New variable.
2021-08-30gnu: Add python-pybbi.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pybbi): New variable.
2021-08-30gnu: wine: Update to 6.16.Leo Prikler
* gnu/packages/wine.scm (wine): Update to 6.16.
2021-08-30gnu: Add h-client.Denis 'GNUtoo' Carikli
* gnu/packages/hardware.scm (h-client): New variable. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-30gnu: wine: Update to 6.14.Leo Prikler
* gnu/packages/wine.scm (wine): Update to 6.14. [#:phases]: Patch Makefile to correctly locate ntdll.so. (wine64)[#:phases]: Likewise.
2021-08-30gnu: Add ocaml-odoc-parser.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-odoc-parser): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30build-system: chicken: Add 'egg-uri' procedure.Xinglu Chen
Once Chicken 6 gets released, we can just adjust the URL in the ‘egg-uri’ procedure, instead of having to change the URL for all the Chicken packages. Making things a little more future-proof. * guix/build-system/chicken.scm (egg-uri): New procedure. * guix/import/egg.scm (egg-source-url): Adjust accordingly. (egg->guix-package): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30gnu: scrot: Update to 1.6.Ludovic Courtès
* gnu/packages/xdisorg.scm (scrot): Update to 1.6. [native-inputs]: Add PKG-CONFIG. [inputs]: Add IMLIB2.
2021-08-30build: Build (gnu packages rocm).Ludovic Courtès
This is a followup to df90cb1d5c82cc83a305f6323f867f14e30ce240. * gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/rocm.scm.
2021-08-30services: hurd-vm: Use the new 'targets' field of <bootloader-configuration>.Ludovic Courtès
* gnu/services/virtualization.scm (%hurd-vm-operating-system): Use 'targets' instead of 'target' for the 'bootloader-configuration' field.
2021-08-30bootloader: Report location of the deprecated 'target' field.Ludovic Courtès
This is a followup to 2ca982ff41270288913ad6b7d5d9e1cad87b06d9. * gnu/bootloader.scm (warn-target-field-deprecation): New macro. (<bootloader-configuration>)[target]: Add 'sanitize' property. (%warn-target-field-deprecation): New procedure. (bootloader-configuration-target): Define using 'define-deprecated'. (bootloader-configuration-targets): Use '%bootloader-configuration-target' rather than the deprecated one.
2021-08-30build: Build (gnu system setuid).Ludovic Courtès
This is a followup to 45235e67e4aeac96ad8d60265bef054990aeb425. * gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/system/setuid.scm.
2021-08-30gnu: extra-cmake-modules: Avoid dependency on qtbase when on armhf.Ludovic Courtès
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[native-inputs]: Remove QTBASE-5 on armhf-linux. [arguments]: Set #:tests? accordingly.
2021-08-30services: xorg: Delay the xorg-configuration-modules field evaluation.Mathieu Othacehe
When building an image with the "system" parameter set to an emulated architecture, the xorg-configuration-modules field needs to be evaluated once the %current-system parameter is set, otherwise this parameter is set to the current host system. * gnu/services/xorg.scm (<xorg-configuration>)[modules]: Make it a thunked field.
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