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* gnu/packages/bioconductor.scm (r-a4base): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-a4core): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.80.0.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.0.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.0.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.26.0.
[propagated-inputs]: Add r-scales.
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* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-anota): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.8.0.
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* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-lumi): Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.46.0.
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* gnu/packages/bioconductor.scm (r-minfi): Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-milor): Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-mia): Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.42.0.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.68.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.26.0.
[propagated-inputs]: Add r-matrix.
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* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.37.0.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 3.14.0.
[native-inputs]: Remove r-nbconvertr.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-metapod): Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.0.
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* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.8.0.
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