| Age | Commit message (Expand) | Author |
|---|
| 2021-03-17 | gnu-maintenance: 'release-file?' rejects checksum files....* guix/gnu-maintenance.scm (release-file?): Reject ".md5sum",
".sha1sum", and ".sha256sum".
| Ludovic Courtès |
| 2021-03-17 | gnu-maintenance: 'latest-html-release' considers non-relative URLs....* guix/gnu-maintenance.scm (latest-html-release): Allow for URL to be an
arbitrary URL rather than a relative URL reference.
| Ludovic Courtès |
| 2021-03-17 | gnu-maintenance: Use (htmlprag) for 'latest-html-release'....* guix/gnu-maintenance.scm (html->sxml): Remove. Autoload (htmlprag)
instead.
* doc/guix.texi (Requirements): Mention 'guix refresh' for the Guile-Lib
dependency.
| Ludovic Courtès |
| 2021-03-17 | maint: Check whether Guile-zlib is recent enough....This is a followup to a04aef2430645357d7796969d4b6453478ff8a3f.
* m4/guix.m4 (GUIX_CHECK_GUILE_ZLIB): New macro.
* configure.ac: Use it when checking for Guile-zlib.
| Ludovic Courtès |
| 2021-03-17 | doc: Define the term "profile"....Fixes <https://bugs.gnu.org/46803>.
Reported by Luis Felipe <luis.felipe.la@protonmail.com>.
* doc/guix.texi (Getting Started): Introduce the term "profile".
(Invoking guix package): Likewise.
| Ludovic Courtès |
| 2021-03-17 | daemon: Correctly handle '--discover' with no value....Previously, we'd get:
$ guix-daemon --discover
error: basic_string::_M_construct null not valid
* nix/nix-daemon/guix-daemon.cc (parse_opt): Change second argument to
'settings.set' to properly handle case where ARG is NULL.
| Ludovic Courtès |
| 2021-03-17 | gnu: gnome-autoar: Update to 0.3.1 [fixes CVE-2021-28650]....* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.1.
| Léo Le Bouter |
| 2021-03-17 | gnu: pzstd: Update to 1.4.9 [fixes CVE-2021-24032]....* gnu/packages/compression.scm (pzstd): Use 'package/inherit' over zstd so any
graft applied to zstd cascades onto pzstd which is built from the same
source.
| Léo Le Bouter |
| 2021-03-17 | gnu: Use PACKAGE/INHERIT in more places....* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
| Mark H Weaver |
| 2021-03-16 | gnu: gvfs: Add 'lint-hidden-cve' property....* gnu/packages/gnome.scm (gvfs)[properties]: New field, marking
CVE-2019-12447, CVE-2019-12448, and CVE-2019-12449 as fixed.
| Mark H Weaver |
| 2021-03-16 | gnu: gnome-shell: Add 'lint-hidden-cve' property....* gnu/packages/gnome.scm (gnome-shell)[properties]: New field, marking
CVE-2019-3820 as fixed.
| Mark H Weaver |
| 2021-03-16 | gnu: qemu: Enable reproducible builds....Fixes <https://issues.guix.gnu.org/47176>. The solution was suggested by
bonzini on OFTC's #qemu channel.
* gnu/packages/virtualization.scm (qemu)[snippet]: Delete bundled meson copy.
[native-inputs]: Add meson-next.
| Maxim Cournoyer |
| 2021-03-16 | gnu: Add meson-next....* gnu/packages/build-tools.scm (meson-next): New variable.
| Maxim Cournoyer |
| 2021-03-16 | gnu: mpg321: Fix CVE-2019-14247....* gnu/packages/patches/mpg321-CVE-2019-14247.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mp3.scm (mpg321)[source]: Apply it.
Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
Signed-off-by: Leo Famulari <leo@famulari.name>
| Kei Kebreau |
| 2021-03-16 | gnu: varnish-modules: Update to 0.17.1 [fixes CVE-2021-28543]....* gnu/packages/web.scm (varnish-modules): Update to 0.17.1.
| Léo Le Bouter |
| 2021-03-16 | news: Add ‘de’ translation. | Florian Pelz |
| 2021-03-16 | gnu: tor: Update to 0.4.5.7 [security fixes]....* gnu/packages/tor.scm (tor): Update to 0.4.5.7.
| Efraim Flashner |
| 2021-03-16 | gnu: snakemake: Add missing inputs....* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add
python-nbformat, python-pulp, and python-toposort.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Add python-toposort....* gnu/packages/python-xyz.scm (python-toposort): New variable.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Add python-pulp....* gnu/packages/python-xyz.scm (python-pulp): New variable.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Add python-amply....* gnu/packages/python-xyz.scm (python-amply): New variable.
| Ricardo Wurmus |
| 2021-03-16 | gnu: emacs-easy-kill: Update to 0.9.4....* gnu/packages/emacs-xyz.scm (emacs-easy-kill): Update to 0.9.4.
| Nicolas Goaziou |
| 2021-03-16 | gnu: emacs-leaf: Update to 4.4.0....* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.0.
| Nicolas Goaziou |
| 2021-03-16 | gnu: python-pikepdf: Update to 2.9.0....* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
| Nicolas Goaziou |
| 2021-03-16 | gnu: asymptote: Update to 2.70....* gnu/packages/plotutils.scm (asymptote): Update to 2.70.
| Nicolas Goaziou |
| 2021-03-16 | gnu: b4: Fix setup.py version incompatibility....* gnu/packages/version-control.scm (b4)[source]: Add snippet to not
require too specific of a version.
Reported-by: Kyle Meyer <kyle@kyleam.com>
| Efraim Flashner |
| 2021-03-16 | gnu: libmemcached: Disable test suite....* gnu/packages/databases.scm (libmemcached): Disable test suite. Removing
trailing #t.
[phases]{fix-configure}: Remove useless group in pattern.
{disable-failing-tests}: Remove phase.
{build-and-install-html-doc}: Order after the build phase.
[home-page]: Please 'guix lint'.
Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
| Maxim Cournoyer |
| 2021-03-16 | gnu: hisat2: Update to 2.2.1....* gnu/packages/bioinformatics.scm (hisat2): Update to 2.2.1.
[source]: Fetch from git repository on Github.
[arguments]: Add phase to build manual; remove trailing #t from other phases.
[native-inputs]: Remove unzip.
[home-page]: Update.
[inputs]: Add python-wrapper.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Remove MongoDB....mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the
release tarball under the SSPL, therefore we cannot provide mongodb while
upholding to good security standards.
It turns out feff80cec3c97a3df2c20d300be12d67f79d4f22 was right since while
the main license file wasnt altered to SSPL, some files in the tree contain
SSPL headers.
* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): Remove.
* gnu/packages/databases.scm (mongo-tools): Remove.
* doc/guix.texi (mongodb-service-type): Remove.
* gnu/tests/databases.scm (%test-mongodb, %mongodb-os, run-mongodb-test):
Remove.
* gnu/services/databases.scm (mongodb-configuration, mongodb-configuration?,
mongodb-configuration-mongodb, mongodb-configuration-config-file,
mongodb-configuration-data-directory, mongodb-service-type,
%default-mongodb-configuration-file, %mongodb-accounts, mongodb-activation,
mongodb-shepherd-service): Remove.
* gnu/packages/databases.scm (mongodb): Remove.
| Léo Le Bouter |
| 2021-03-16 | gnu: git: Fix git-manpages native input's hash....This is a follow-up to commit ab9629b7c91ff7d6392a03512cfe442823267777.
* gnu/packages/version-control.scm (git)[native-inputs]: Fix git-manpages's
hash.
| Léo Le Bouter |
| 2021-03-16 | gnu: git: Update to 2.31.0....* gnu/packages/version-control.scm (git): Update to 2.31.0.
| Léo Le Bouter |
| 2021-03-16 | gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]....* gnu/packages/python-web.scm (python2-urllib3)[base]: Base off of
python-urllib3/fixed.
| Léo Le Bouter |
| 2021-03-16 | gnu: python-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]....* gnu/packages/python-web.scm (python-urllib3/fixed): New variable.
(python-urllib3)[replacement]: Graft.
| Léo Le Bouter |
| 2021-03-16 | gnu: tmsu: Improve installation....* gnu/packages/file-systems.scm (tmsu)[arguments]: Don't install go
source files. Install binary as tmsu instead of TMSU.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Stefan Reichör |
| 2021-03-16 | gnu: glances: Update to 3.1.6....* gnu/packages/python-xyz.scm (glances): Update to 3.1.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Stefan Reichör |
| 2021-03-15 | syscalls: mounts: Fix a matching bug....On some systems, the columns in /proc/self/mountinfo look like this:
23 28 0:21 / /proc rw,nosuid,nodev,noexec,relatime shared:11 - proc proc rw
Before this change, the mounts procedure was written with the assumption that
the type and source could always be found in columns 8 and 9, respectively.
However, the proc(5) man page explains that there can be zero or more optional
fields starting at column 7 (e.g., "shared:11" above), so this assumption is
false in some situations.
* guix/build/syscalls.scm (mounts): Update the match pattern to use ellipsis
to match zero or more optional fields followed by a single hyphen. Remove the
trailing ellipsis, since multiple ellipses are not allowed in the same level.
The proc(5) man page indicates that there are no additional columns, so it is
probably OK to match an exact number of columns at the end like this.
| Chris Marusich |
| 2021-03-15 | Revert some commits that caused `guix pull` to fail....This reverts commits 821e6439212f8e94580674eaaff2ce6752cd3b18 through
8f9fd9b70c7bf166d96a4b1dc8b427f8cdf040b5.
Specifically, these commits caused the build failure of
guix-package-cache.drv like this:
------
(repl-version 0 1 1)
Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'...
(exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f))
| Leo Famulari |
| 2021-03-15 | gnu: r-biocparallel: Build reproducibly....* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
| Ricardo Wurmus |
| 2021-03-15 | gnu: r-delayedarray: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-rsamtools: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here...
* gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biostrings: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biocparallel: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here...
* gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biomart: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-annotationdbi: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here...
* gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biobase: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-genomicranges: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-xvector: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-limma: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
| zimoun |
| 2021-03-15 | gnu: dbus-c++: Fix command name in description....* gnu/packages/glib.scm (dbus-c++)[description]: Fix command prefix in
description, and mention the second command installed as well.
| Maxim Cournoyer |
| 2021-03-15 | news: Add news entry about changes to the QEMU binfmt service....* etc/news.scm: Add entry.
| Maxim Cournoyer |
