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2019-12-16gnu: libsecp256k1: Update to 20191213.Vagrant Cascadian
* gnu/packages/crypto (libsecp256k1): Update to 20191213.
2019-12-16gnu: python-gffutils: Update description.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-gffutils)[description]: Reflow paragraph and fix spelling of SQLite.
2019-12-16gnu: Add python-gffutils.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-gffutils): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-16gnu: Remove python2-dask.Ricardo Wurmus
This package can no longer be built with Python 2. * gnu/packages/python-xyz.scm (python2-dask): Remove variable.
2019-12-16gnu: python-dask: Update to 2.9.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask): Update to 2.9.0. [arguments]: Adjust phase to disable broken tests. [propagated-inputs]: Add python-fsspec and python-packaging.
2019-12-16gnu: Add python-fsspec.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-fsspec): New variable.
2019-12-16gnu: python-pyfaidx: Update to 0.5.7.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.7.
2019-12-16gnu: guix-data-service: Update to 0.0.1-8.a019a5e.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-8.a019a5e.
2019-12-16Revert "gnu: ccls: Configure using -isystem for header files."Brett Gilio
This reverts commit 2c82d4ad10de8e0ba462d81401385c5e7499f6e2.
2019-12-16Revert "gnu: ccls: Adjust indentation"Brett Gilio
This reverts commit 3c80b07a0b4a2f1c2702acd6896f94892c516709.
2019-12-16gnu: Add python-argh.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-argh): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-16gnu: Add python-iocapture.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-iocapture): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-16gnu: gash: Update to 0.2.0.Jan Nieuwenhuizen
* gnu/packages/shells.scm (gash): Update to 0.2.0.
2019-12-16gnu: psmisc: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/linux.scm (psmisc)[arguments]: Pass ac_cv_func_malloc_0_nonnull=yes and ac_cv_func_realloc_0_nonnull=yes options that are required when cross-compiling.
2019-12-16gnu: iw: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/linux.scm (iw)[arguments]: Set PKG_CONFIG and CC variables correctly for cross-compilation.
2019-12-16gnu: yoshimi: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/music.scm (yoshimi): Update to 1.6.1.
2019-12-16gnu: emacs-helm-fish-completion: Update to 0.2.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): Update to 0.2.
2019-12-16Revert "gnu: info-reader: Fix cross-compilation."Mathieu Othacehe
This reverts commit 614a1e3fa2d731d4719f03912b1b87fb4fd309cb. This is broken on master with the following error: output (`/gnu/store/6rnhfi8zrdajbahbq9ii8bpj7mwfcjba-info-reader-6.6') is not allowed to refer to path `/gnu/store/ziinjmbnq004866mwjrczsk12wf35qb8-perl-5.30.0' build of /gnu/store/nnfvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv failed View build log at '/var/log/guix/drvs/nn/fvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv.bz2'.
2019-12-16gnu: libreoffice: Update to 6.3.4.2.Efraim Flashner
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.3.4.2.
2019-12-16gnu: guile-studio: Update to 0.0.2.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0.0.2. [arguments]: Only include emacs inputs in INPUTS make flag.
2019-12-16gnu: ccls: Adjust indentationBrett Gilio
* gnu/packages/cpp.scm (ccls): Adjust indentation.
2019-12-16gnu: ccls: Configure using -isystem for header files.Brett Gilio
* gnu/packages/cpp.scm (ccls): Configure using -isystem for header files. [arguments]: Use GCC as a build input for preprocessing and searching GCC subdirectories, this provides better support for header file completion on runtime. [inputs]: Add ncurses for command-line support. Remove LLVM, it is not needed. [native-inputs]: Move rapidjson from inputs to native-inputs, add GCC.
2019-12-15gnu: Add python-sphinx-intlAlexandros Theodotou
* gnu/packages/sphinx.scm (python-sphinx-intl): New variable. Signed-off-by: Brett Gilio <brettg@posteo.net>
2019-12-15gnu: Add emacs-eww-lnum.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-eww-lnum): New variable.
2019-12-15gnu: Add pinfo.Ricardo Wurmus
* gnu/packages/texinfo.scm (pinfo): New variable.
2019-12-15gnu: r-quantreg: Update to 5.54.Ricardo Wurmus
* gnu/packages/statistics.scm (r-quantreg): Update to 5.54.
2019-12-15gnu: r-glmnet: Update to 3.0-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-glmnet): Update to 3.0-2.
2019-12-15gnu: r-sparsem: Update to 1.78.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sparsem): Update to 1.78. [inputs]: Move gfortran from here... [native-inputs]: ...to here.
2019-12-15gnu: r-segmented: Update to 1.1-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-segmented): Update to 1.1-0.
2019-12-15gnu: r-rmarkdown: Update to 2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.0.
2019-12-15gnu: r-dbi: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.0.
2019-12-15gnu: r-plyr: Update to 1.8.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.5. [native-inputs]: Move r-rcpp from here... [propagated-inputs]: ...to here.
2019-12-15gnu: r-nlme: Update to 3.1-143.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-143.
2019-12-15gnu: r-spam: Update to 2.5-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spam): Update to 2.5-1.
2019-12-15gnu: r-tidytree: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.1.
2019-12-15gnu: r-tm: Update to 0.7-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-tm): Update to 0.7-7.
2019-12-15gnu: r-fmsb: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.0.
2019-12-15gnu: r-lmertest: Update to 3.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-1.
2019-12-15gnu: r-performance: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.4.2.
2019-12-15gnu: r-multcomp: Update to 1.4-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-11.
2019-12-15gnu: r-deriv: Update to 4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-deriv): Update to 4.0.
2019-12-15gnu: r-rdpack: Update to 0.11-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-1.
2019-12-15gnu: r-renv: Update to 0.9.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 0.9.2.
2019-12-15gnu: r-sna: Update to 2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sna): Update to 2.5.
2019-12-15gnu: r-tinytex: Update to 0.18.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.18.
2019-12-15gnu: r-mice: Update to 3.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): Update to 3.7.0.
2019-12-15gnu: r-broom: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.5.3.
2019-12-15gnu: r-rmysql: Update to 0.10.18.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.18.
2019-12-15gnu: r-amap: Update to 0.8-18.Ricardo Wurmus
* gnu/packages/cran.scm (r-amap): Update to 0.8-18.
2019-12-15gnu: r-rgooglemaps: Update to 1.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.
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