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2021-05-29gnu: mc: Order inputs alphabetically....* gnu/packages/mc.scm (mc)[native-inputs, inputs]: Order alphabetically. Tobias Geerinckx-Rice
2021-05-29Sort module imports in (gnu packages mc)....* gnu/packages/mc.scm: Order module imports alphabetically. Tobias Geerinckx-Rice
2021-05-29gnu: mc: Support mice....* gnu/packages/mc.scm (mc)[inputs]: Add gpm. Tobias Geerinckx-Rice
2021-05-29gnu: cuirass: Update to 1.0.0-23.58e3551....* gnu/packages/ci.scm (cuirass): Update to 1.0.0-23.58e3551. Mathieu Othacehe
2021-05-29gnu: Add mosaicatcher....* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable. Ricardo Wurmus
2021-05-29gnu: nyacc: Update to 1.04.0....* gnu/packages/mes.scm (nyacc): Update to 1.04.0. Ricardo Wurmus
2021-05-29Revert "gnu: Add mosaicatcher."...mosaicatcher-unbundle-htslib.patch is missing. This reverts commit b1ae0f30d856503fa311d380584a6d7c80559332. Christopher Baines
2021-05-29gnu: emacs-cwl-mode: Update to 0.2.6....* gnu/packages/emacs-xyz.scm (emacs-cwl-mode): Update to 0.2.6. Nicolas Goaziou
2021-05-29gnu: emacs-csharp-mode: Update to 0.11.0....* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 0.11.0. Nicolas Goaziou
2021-05-29gnu: emacs-counsel-jq: Update to 1.1....* gnu/packages/emacs-xyz.scm (emacs-counsel-jq): Update to 1.1. Nicolas Goaziou
2021-05-28gnu: emacs-cider: Update to 1.1.1....* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.1.1. Nicolas Goaziou
2021-05-28gnu: emacs-chronometrist: Update to 0.7.0....* gnu/packages/emacs-xyz.scm (emacs-chronometrist): Update to 0.7.0. Nicolas Goaziou
2021-05-28gnu: emacs-auto-sudoedit: Update to 1.1.0....* gnu/packages/emacs-xyz.scm (emacs-auto-sudoedit): Update to 1.1.0. Nicolas Goaziou
2021-05-28gnu: emacs-amx: Update to 3.4....* gnu/packages/emacs-xyz.scm (emacs-amx): Update to 3.4. Nicolas Goaziou
2021-05-28gnu: xjobs: Add 'release-monitoring-url' property....* gnu/packages/parallel.scm (xjobs)[properties]: New field. Ludovic Courtès
2021-05-28gnu: Add xjobs....* gnu/packages/parallel.scm (xjobs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Reichör
2021-05-28gnu: hostscope: Add 'release-monitoring-url' property....* gnu/packages/monitoring.scm (hostscope)[properties]: New field. Ludovic Courtès
2021-05-28gnu-maintenance: 'generic-html' correctly handles relative release URLs....* guix/gnu-maintenance.scm (latest-html-release)[url->release]: Fix source URL construction in cases where URL is a possibly relative path. Ludovic Courtès
2021-05-28gnu-maintenance: 'release-file?' accepts 'v' prefix as in "PKG-v1.2.tgz"....* guix/gnu-maintenance.scm (%tarball-rx, %package-name-rx): Accept 'v' and 'V' prefixes. Accept ".tgz" extension. * tests/gnu-maintenance.scm ("release-file?"): Add test. Ludovic Courtès
2021-05-28gnu: Add hostscope....* gnu/packages/monitoring.scm (hostscope): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Reichör
2021-05-28gnu: Add mbuffer....* gnu/packages/networking.scm (mbuffer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Reichör
2021-05-28gnu: ipopt: Update to 3.13.4...* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL. [license]: Change to LICENSE:EPL2.0. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown
2021-05-28gnu: Add cbc....* gnu/packages/maths.scm (cbc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eric Brown
2021-05-28guix build: Emit "nothing to do" warning only when needed....This is a followup to 681af1fb78a735b51dc811aed770b2948212c3fc. * guix/scripts/build.scm (guix-build): Emit "nothing to do" warning only when both DRV and ITEMS are null. Ludovic Courtès
2021-05-28doc: Spell out the implications of disabling substitutes....Suggested by elb on #guix. * doc/guix.texi (Binary Installation): Add note explaining the implications of disabling substitutes. Ludovic Courtès
2021-05-28guix package: Do not warn about "missing arguments" when there's nothing to do....In some cases, running "guix upgrade" can trigger this warning, and "missing arguments" is misleading then. Reported by flatwhatson on #guix. * guix/scripts/package.scm (process-actions): Change warning to "nothing to do". Ludovic Courtès
2021-05-28gnu: Add mosaicatcher....* gnu/packages/bioinformatics.scm (mosaicatcher): New variable. Ricardo Wurmus
2021-05-28gnu: gnutls: Replace with 3.6.16 [fixes CVE-2021-20305]....* gnu/packages/tls.scm (gnutls)[replacement]: New field. (gnutls-3.6.16): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Solene Rapenne
2021-05-28gnu: jami-gnome: Include phases from the glib-or-gtk-build-system....This makes Jami less dependent on the environment it is run within; for example when using Jami on a foreign distributions. * gnu/packages/jami.scm (jami-gnome)[imported-modules]: New argument. [modules]: New argument. [phases]{glib-or-gtk-compile-schemas, glib-or-gtk-wrap}: New phases. Reported-by: Simon Tournier <zimon.toutoune@gmail.com> Maxim Cournoyer
2021-05-28gnu: cuirass: Update to 1.0.0-22.3ac739b....* gnu/packages/ci.scm (cuirass): Update to 1.0.0-22.3ac739b. Mathieu Othacehe
2021-05-28gnu: tryton: Allow disabling the test suite....* gnu/packages/tryton.scm (tryton-phases): Respect 'tests?' in the 'check' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos
2021-05-28gnu: tryton: Use local 'inputs' instead of global '%build-inputs'....The former is preferred above the latter. * gnu/packages/tryton.scm (tryton-phases): Look up "trytond" in the 'inputs' argument instead of in '%build-inputs'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos
2021-05-28gnu: tryton: Factor out custom ‘check’ phase....* gnu/packages/tryton.scm (tryton-phases): New procedure. (tryton-arguments): New procedure. (python-trytond-account)[arguments]: Use 'tryton-phases'. (python-trytond-account-invoice)[arguments]: Likewise. (python-trytond-account-invoice-stock)[arguments]: Likewise. (python-trytond-account-product)[arguments]: Likewise. (python-trytond-analytic-account)[arguments]: Likewise. (python-trytond-company)[arguments]: Likewise. (python-trytond-country)[arguments]: Likewise. (python-trytond-currency)[arguments]: Likewise. (python-trytond-party)[arguments]: Likewise. (python-trytond-product)[arguments]: Likewise. (python-trytond-purchase)[arguments]: Likewise. (python-trytond-purchase-request)[arguments]: Likewise. (python-trytond-stock)[arguments]: Likewise. (python-trytond-stock-lot)[arguments]: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos
2021-05-28import: opam: Generate license for package....* guix/import/opam.scm (opam->guix-package): Generate license for the ‘license’ field. * tests/opam.scm (test-opam-file): Update accordingly. ("opam->guix-package"): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-05-28gnu: libraft: Update to 0.10.1...* gnu/packages/cluster.scm (libraft): Update to 0.10.1 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dion Mendel
2021-05-28git-download: Support submodules in 'git-predicate'....* guix/git-download.scm (git-file-list): Add prefix and recursive? arguments. Recurse into submodules when requested. (git-predicate): Add recursive? argument. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andrew Whatson
2021-05-28git-download: 'git-predicate' now ignores deleted files....When git-predicate is used on an active worktree, some files in the index might not exist on the filesystem. Instead of failing with "No such file or directory", these should be ignored. * guix/git-download.scm (git-predicate): Wrap 'lstat' call in 'false-if-exception'. Return RESULT when STAT is #f. Co-authored-by: Andrew Whatson <whatson@gmail.com> Ludovic Courtès
2021-05-28scripts: Commands warn when passed zero arguments....This is a followup to 3f8326237df780404c172ef4127195cc20becd66. * guix/scripts/archive.scm (export-from-store): Warn then FILES is empty. * guix/scripts/build.scm (guix-build): Likewise. * guix/scripts/copy.scm (warn-if-empty): New procedure. (send-to-remote-host, retrieve-from-remote-host): Call it. * guix/scripts/edit.scm (guix-edit): Warn when SPECS is empty. * guix/scripts/environment.scm (guix-environment): Warn when MANIFEST has zero entries. * guix/scripts/graph.scm (guix-graph): Warn then ITEMS is empty. * guix/scripts/package.scm (process-actions): Warn when FILES and TRANS are both empty. Ludovic Courtès
2021-05-28deploy: Error out when the FILE argument is missing....* guix/scripts/deploy.scm (guix-deploy): Error out when FILE is false. Ludovic Courtès
2021-05-28gnu: intel-mpi-benchmarks: Remove top-level reference to 'openmpi'....This circular dependency could lead to "unbound variable" errors when running 'guix show openmpi' or similar. * gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Inline code formerly in 'intel-mpi-benchmarks' procedure. (intel-mpi-benchmarks): Remove. Ludovic Courtès
2021-05-28gnu: cuirass: Update to 1.0.0-21.65ae16b....* gnu/packages/ci.scm (cuirass): Update to 1.0.0-21.65ae16b. Mathieu Othacehe
2021-05-28gnu: hackrf: Update to 2021.03.1....* gnu/packages/radio.scm (hackrf): Update to 2021.03.1. Guillaume Le Vaillant
2021-05-28gnu: Add python-cachetools....* gnu/packages/python-xyz.scm (python-cachetools): New variable. Roel Janssen
2021-05-28gnu: gnuradio: Add python-matplotlib dependency explicitly....* gnu/packages/radio.scm (gnuradio)[inputs]: Add python-matplotlib. Guillaume Le Vaillant
2021-05-28gnu: Add python-argopt....* gnu/packages/python-xyz.scm (python-argopt): New variable. Roel Janssen
2021-05-27gnu: Add python-pyega3....* gnu/packages/bioinformatics.scm (python-pyega3): New variable. Roel Janssen
2021-05-27gnu: Add python-htsget....* gnu/packages/bioinformatics.scm (python-htsget): New variable. Roel Janssen
2021-05-27gnu: Add python-helper....* gnu/packages/python-xyz.scm (python-helper): New variable. Roel Janssen
2021-05-27gnu: Add python-logutils....* gnu/packages/python-xyz.scm (python-logutils): New variable. Roel Janssen
2021-05-27gnu: entr: Update to 4.9....Signed-off-by: Leo Famulari <leo@famulari.name> Solene Rapenne