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2021-10-21gnu: python-biopython: Update to 1.76.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.76. (python-biopython-1.73): New variable. (instrain)[inputs]: Replace python-biopython with python-biopython-1.73.
2021-10-21gnu: python-levenshtein: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-levenshtein): Update to 0.12.2.
2021-10-21gnu: instrain: Update to 1.5.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (instrain): Update to 1.5.4.
2021-10-21gnu: Add python-bwapy.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bwapy): New variable.
2021-10-21gnu: Add python-pyspoa.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyspoa): New variable.
2021-10-21gnu: Add r-fcscan.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
2021-10-21gnu: Add cl-redis.Charles
* gnu/packages/lisp-xyz.scm (cl-redis, sbcl-redis, ecl-redis): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-21gnu: Add cl-should-test.Charles Jackson
* gnu/packages/lisp-check.scm (cl-should-test, ecl-should-test, sbcl-should-test): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-21gnu: Add cl-rutils.Charles
* gnu/packages/lisp-xyz.scm (cl-rutils, sbcl-rutils, ecl-rutils): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-21gnu: dfu-util: Update to 0.11.Tobias Geerinckx-Rice
* gnu/packages/flashing-tools.scm (dfu-util): Update to 0.11.
2021-10-21gnu: eid-mw: Update to 5.0.28.Tobias Geerinckx-Rice
* gnu/packages/security-token.scm (eid-mw): Update to 5.0.28. [arguments]: Remove unused 'make-reproducible phase.
2021-10-21gnu: flamp: Update to 2.2.07.Tobias Geerinckx-Rice
* gnu/packages/radio.scm (flamp): Update to 2.2.07.
2021-10-21gnu: font-gnu-unifont: Cross-compile binaries.Tobias Geerinckx-Rice
* gnu/packages/fonts.scm (font-gnu-unifont)[arguments]: Set CC to CC-FOR-TARGET in #:make-flags, where it has an effect. Remove it from the environment, where it did not. Respect #:make-flags during installation.
2021-10-21gnu: font-gnu-unifont: Update to 14.0.01.Tobias Geerinckx-Rice
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 14.0.01. [arguments]: Don't explicitly return #t from phases.
2021-10-21gnu: autofs: Update to 5.1.8.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (autofs): Update to 5.1.8. [arguments]: Don't explicitly return #t from phases.
2021-10-21gnu: genimage: Factorise substitutions.Tobias Geerinckx-Rice
* gnu/packages/genimage.scm (genimage)[arguments]: Factorise input substitution for great line savings; also fun. Don't sneakily replace mkdosfs with mkfs.vfat. Remove obsolete fixes. Fix tests in their own 'fix-failing-tests phase. Don't explicitly return #t from any phases.
2021-10-21gnu: ethtool: Update to 5.14.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (ethtool): Update to 5.14.
2021-10-21gnu: cdparanoia: Don't build in parallel.Tobias Geerinckx-Rice
* gnu/packages/cdrom.scm (cdparanoia)[arguments]: Disable #:parallel-build?. Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-10-20gnu: dragonfly-reverb: Prepare for cross-compilation.Tobias Geerinckx-Rice
* gnu/packages/music.scm (dragonfly-reverb)[arguments]: Use CC-FOR-TARGET.
2021-10-20gnu: dragonfly-reverb: Update to 3.2.5.Tobias Geerinckx-Rice
* gnu/packages/music.scm (dragonfly-reverb): Update to 3.2.5. [arguments]: Don't explicitly return #t from phases.
2021-10-20gnu: dpf-plugins: Prepare for cross-compilation.Tobias Geerinckx-Rice
* gnu/packages/music.scm (dpf-plugins)[arguments]: Set CC in #:make-flags rather than as an environment variable, and set it to CC-FOR-TARGET.
2021-10-20gnu: dpf-plugins: Update to 1.4.Tobias Geerinckx-Rice
* gnu/packages/music.scm (dpf-plugins): Update to 1.4.
2021-10-20gnu: python-arrow: Move python-pytz to native-inputs.jgart
* gnu/packages/time.scm (python-arrow)[propagated-inputs]: Move python-pytz to ... [native-inputs]: ... here since it is only used for testing purposes. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-20gnu: Add r-pnwcolors.zimoun
* gnu/packages/cran.scm (r-pnwcolors): New variable.
2021-10-20gnu: Add r-mhg.Marcel Schilling
* gnu/packages/cran.scm (r-mhg): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-10-20gnu: allegro: Update to 4.4.3.1.Tobias Geerinckx-Rice
* gnu/packages/game-development.scm (allegro): Update to 4.4.3.1. [arguments]: Don't explicitly return #t from phases.
2021-10-20doc: Fix typo.Tobias Geerinckx-Rice
* doc/guix.texi (Invoking guix system, Invoking guix home): Fix ‘are […] two month old’ typo.
2021-10-20gnu: phockup: Update to 1.7.1.Arun Isaac
* gnu/packages/image.scm (phockup): Update to 1.7.1. [arguments]: In configure phase, substitute the more specific "'exiftool" instead of "exiftool". Add wrap-program phase. Do not return #t from custom phases. [inputs]: Add python-tqdm.
2021-10-19gnu: jasper: Update to 2.0.33.Tobias Geerinckx-Rice
* gnu/packages/image.scm (jasper): Update to 2.0.33.
2021-10-19gnu: dblatex: Update to 0.3.12.Tobias Geerinckx-Rice
* gnu/packages/docbook.scm (dblatex): Update to 0.3.12. [arguments]: Don't explicitly return #t from phases.
2021-10-19gnu: giac: Update to 1.7.0-39.Nicolas Goaziou
* gnu/packages/algebra.scm (giac): Update to 1.7.0-39.
2021-10-19gnu: emacs-company-quickhelp: Update to 2.3.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-company-quickhelp): Update to 2.3.0.
2021-10-19gnu: emacs-shell-command+: Update to 2.3.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-shell-command+): Update to 2.3.1.
2021-10-19gnu: emacs-treemacs: Update to 2.9.4.la snesne
* gnu/packages/emacs-xyz.scm (emacs-treemacs): Update to 2.9.4. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-10-19gnu: emacs-treemacs-extra: Add missing inputsla snesne
* gnu/packages/emacs-xyz.scm (emacs-treemacs-extra)[propagated-inputs]: Add emacs-all-the-icons, emacs-perspective Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-10-19gnu: Add wl-clipboard-x11.Efraim Flashner
* gnu/packages/xdisorg.scm (wl-clipboard-x11): New variable.
2021-10-19gnu: Add gr-framework.Efraim Flashner
* gnu/packages/graphics.scm (gr-framework): New variable.
2021-10-19gnu: Add julia-media.zimoun
* gnu/packages/julia-xyz.scm (julia-media): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: Add julia-codeczlib.zimoun
* gnu/packages/julia-xyz.scm (julia-codeczlib): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: Add julia-transcodingstreams.zimoun
* gnu/packages/julia-xyz.scm (julia-transcodingstreams): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: Add julia-functors.zimoun
* gnu/packages/julia-xyz.scm (julia-functors): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: julia-stackviews: Enable tests.zimoun
* gnu/packages/julia-xyz (julia-stackviews)[arguments]: Remove #:tests?. [native-inputs]: Add julia-aqua and julia-documenter. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: julia-paddedviews: Enable tests.zimoun
* gnu/packages/julia-xyz (julia-paddedviews)[arguments]: Remove. [native-inputs]: Add julia-documenter. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: julia-irtools: Enable tests.zimoun
* gnu/packages/julia-xyz (julia-irtools)[arguements]: Remove. [native-inputs]: Add julia-documenter. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: julia-colortypes: Enable tests.zimoun
* gnu/packages/julia-xyz (julia-colortypes)[arguments]: Remove. [native-inputs]: Add julia-documenter. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-19gnu: julia-coordinatetransformations: Enable tests.zimoun
* gnu/packages/julia-xyz.scm (julia-coordinatetransformations)[arguments]: Remove. [native-inputs]: Add julia-documenter, julia-forwarddiff, julia-unitful. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-18gnu: gajim: Update to 1.3.3.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (gajim): Update to 1.3.3. [arguments]: Remove 'disable-failing-tests phase, as all now pass. Don't explicitly return #t from other phases.
2021-10-18gnu: python-nbxmpp: Update to 2.0.4.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (python-nbxmpp): Update to 2.0.4.
2021-10-18gnu: font-borg-sans-mono: Update to 0.3.3.Charles
* gnu/packages/fonts.scm (font-borg-sans-mono): Update to 0.3.3. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-10-18gnu: hdf5@1.12: Update to 1.12.1.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (hdf5-1.12): Update to 1.12.1.
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