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2020-06-22gnu: r-zvcv: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-zvcv): Update to 2.1.0. [propagated-inputs]: Remove r-partitions; add r-bh, r-dplyr, r-magrittr, and r-rlinsolve.
2020-06-22gnu: r-umap: Update to 0.2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-umap): Update to 0.2.6.0.
2020-06-22gnu: r-ldheatmap: Update to 0.99-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-8.
2020-06-22gnu: r-nonnest2: Update to 0.5-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-4.
2020-06-22gnu: r-rcppgsl: Update to 0.3.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.8. [native-inputs]: Remove r-knitr.
2020-06-22gnu: r-ggeffects: Update to 0.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.15.0.
2020-06-22gnu: r-bayestestr: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.7.0.
2020-06-22gnu: r-rstatix: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstatix): Update to 0.6.0. [propagated-inputs]: Add r-generics.
2020-06-22gnu: r-radiant-data: Update to 1.3.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.9.
2020-06-22gnu: r-tinytex: Update to 0.24.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.24.
2020-06-22gnu: r-xfun: Update to 0.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.15.
2020-06-22gnu: r-calibrate: Update to 1.7.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-calibrate): Update to 1.7.7.
2020-06-22gnu: r-htmltable: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltable): Update to 2.0.0. [native-inputs]: Add r-knitr.
2020-06-22gnu: r-htmltools: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.0. [propagated-inputs]: Remove r-rcpp; add r-base64enc.
2020-06-22gnu: r-v8: Update to 3.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 3.2.0.
2020-06-22gnu: r-hdf5array: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1.
2020-06-22gnu: r-rhdf5: Update to 2.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1.
2020-06-22gnu: r-biomart: Update to 2.44.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1.
2020-06-22gnu: r-genomeinfodb: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2.
2020-06-22gnu: r-gdsfmt: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
2020-06-22gnu: r-cicero: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1. [propagated-inputs]: Add r-stringi.
2020-06-22gnu: r-cytoml: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5. [propagated-inputs]: Add r-xml2.
2020-06-22gnu: r-wiggleplotr: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
2020-06-22gnu: r-regioner: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
2020-06-22gnu: Add r-rlinsolve.Ricardo Wurmus
* gnu/packages/cran.scm (r-rlinsolve): New variable.
2020-06-22gnu: cuirass: Update to 0.0.1-33-61cc56f6.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6.
2020-06-22gnu: xl2tpd: Fix typo.Mathieu Othacehe
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD".
2020-06-22gnu: express: Update to 1.5.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (express): Update to 1.5.3. [source]: Fetch from Github. [arguments]: Add phase "remove-update-check".
2020-06-22gnu: youtube-dl: Update to 2020.06.16.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2020.06.16.
2020-06-22gnu: vmpk: Update home page.Tobias Geerinckx-Rice
gnu/packages/music.scm (vmpk)[home-page]: Update TLD and use HTTPS.
2020-06-22gnu: bison-3.6: Don't change the name of the package.Jakub Kądziołka
This is a follow-up to commit 512d23c65d82bb874ca1fb3c12095b1cec8bbfca. * gnu/packages/bison (bison-3.6)[name]: Remove the overridden value.
2020-06-21gnu: linux-libre@4.14: Update to 4.14.185.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.185. (linux-libre-4.14-pristine-source): Update hash.
2020-06-21gnu: linux-libre@4.9: Update to 4.9.228.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.228. (linux-libre-4.9-pristine-source): Update hash.
2020-06-21gnu: linux-libre@4.4: Update to 4.4.228.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.228. (linux-libre-4.4-pristine-source): Update hash.
2020-06-21gnu: Add r-boruta.Peter Lo
* gnu/packages/statistics.scm (r-boruta): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-06-22gnu: xmoto: Update to 0.6.1.Nicolas Goaziou
* gnu/packages/games.scm (xmoto): Update to 0.6.1. [arguments]: Remove phase installing man pages, now properly handled by the installation script.
2020-06-21gnu: emacs-relint: Update to 1.18.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.18.
2020-06-21gnu: guile: Add 3.0.3.Ludovic Courtès
* gnu/packages/guile.scm (guile-3.0.3): New variable.
2020-06-21gnu: Add seahorse-adventures.Nicolas Goaziou
* gnu/packages/games.scm (seahorse-adventures): New variable.
2020-06-21gnu: Add font-mplus-testflight.Julien Lepiller
* gnu/packages/fonts.scm (font-mplus-testflight): New variable.
2020-06-21gnu: k3b: Update to 20.04.2.Timotej Lazar
* gnu/packages/kde-multimedia.scm (k3b): Update to 20.04.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: k3b: Note the runtime dependency on udisks-service.Timotej Lazar
* gnu/packages/kde-multimedia.scm (k3b)[description]: Note that udisks-service should be enabled. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: k3b: Add inputs for libraries loaded at runtime.Timotej Lazar
Patch the source to load these from absolute paths. Actual loading is done by the Qt library, so we cannot use k3b’s runpath. * gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add libcdio-paranoia and libdvdcss. [arguments]<#:phases>[set-absolute-library-paths]: New phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: k3b: Add inputs for external programs.Timotej Lazar
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add cdrdao, dvd+rw-tools, libburn and sox. [arguments]<#:phases>[wrap-path]: New phase to wrap the binary with paths to the above. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: Add cdrdao.Timotej Lazar
* gnu/packages/cdrom.scm (cdrdao): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21channels: 'authenticate-channel' doesn't check relation with intro commit.Ludovic Courtès
Fixes <https://bugs.gnu.org/41908>. Reported by Jan Nieuwenhuizen <janneke@gnu.org>. The relation check imposed an extra restriction that was unnecessary: it's enough to authenticate the set difference between the closure of START-COMMIT and that of END-COMMIT. Any attempt to jump to an unrelated commit would lead to the authentication failure of one commit on the way. * guix/channels.scm (authenticate-channel): Remove extra 'commit-relation' check when (null? commits).
2020-06-21git-authenticate: Ignore authenticated commit cache when it's not #o600.Ludovic Courtès
* guix/git-authenticate.scm (previously-authenticated-commits): Stat PORT; return the empty list if it's no #o600 and change it to #o600.
2020-06-21gnu: add convmv.Leo Prikler
* gnu/packages/convmv.scm: New file. * gnu/local.mk: Add it to build. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-06-21gnu: Add font-fontna-yasashisa-antique.Julien Lepiller
gnu/packages/fonts.scm (font-fontna-yasashisa-antique): New variable.
2020-06-21services: childhurd: Support more than one instance.Jan (janneke) Nieuwenhuizen
* gnu/services/virtualization.scm (<hurd-vm-configuration>)[options]: Remove "--hda" option. [id,net-options]: New fields. (hurd-vm-net-options): New procedure. Parameterize port forwarding with ID. * gnu/services/virtualization.scm (hurd-vm-shepherd-service): Use them. Parameterize provision with ID, if set. Hardcode "--hda" option for image. * doc/guix.texi (Virtualization Services): Document new fields. Update for hardcoding of "--hda".
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