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2016-04-24gnu: samtools: Update to 1.3.1.Ben Woodcroft
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.1.
2016-04-23Revert "Merge branch 'gnome-updates'"Mark H Weaver
This reverts commit 63655d459e28b09cd8d58743dae14b3460f6c9da, reversing changes made to 80627f51f0238b9450745f4e642172d059ca5bb5.
2016-04-23Revert "gnu: inkscape: Fix build with glibmm-2.48."Mark H Weaver
This reverts commit 0118c6ab62ac90136fe877ded67869c104440ffd.
2016-04-23Revert "gnu: geoclue: Update to 2.4.3."Mark H Weaver
This reverts commit 71a8d3b67c1e85372f0c329b64dbebf12e2b4612.
2016-04-23Revert "gnu: gjs: Skip test_utf8_inout test."Mark H Weaver
This reverts commit 63e7796f626ee40b8259ce56b93f5596e8a1f8c5.
2016-04-23gnu: gjs: Skip test_utf8_inout test.宋文武
* gnu/packages/gnome.scm (gjs)[arguments]: Skip test_utf8_inout test.
2016-04-23gnu: geoclue: Update to 2.4.3.宋文武
* gnu/packages/gnome.scm (geoclue): Update to 2.4.3.
2016-04-23gnu: inkscape: Fix build with glibmm-2.48.Mark H Weaver
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/inkscape.scm (inkscape)[source]: Add patch.
2016-04-22gnu: imlib2: Fix CVE-2016-4024.Leo Famulari
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (imlib2): Use it.
2016-04-22gnu: imlib2: Update to 1.4.8.Leo Famulari
gnu/packages/image.scm (imlib2): Update to 1.4.8.
2016-04-23Merge branch 'gnome-updates'宋文武
2016-04-22gnu: webkitgtk-2.4: Update to 2.4.11.Mark H Weaver
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.11.
2016-04-22gnu: webkitgtk: Update to 2.12.1.Mark H Weaver
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.1.
2016-04-22gnu: linux-libre-4.1: Update to 4.1.22.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.22.
2016-04-22gnu: linux-libre-4.4: Update to 4.4.8.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.8.
2016-04-22gnu: linux-libre: Update to 4.5.2.Mark H Weaver
* gnu/packages/linux.scm (linux-libre): Update to 4.5.2.
2016-04-21build: Move 'Makefile' fragments to subdirectories.Mathieu Lirzin
This follows a convention used by some other GNU packages like Autoconf, Bison, Coreutils, and Gnulib. * doc.am: Rename to ... * doc/local.mk: ... this. * emacs.am: Rename to ... * emacs/local.mk: ... this. * gnu-system.am: Rename to ... * gnu/local.mk: ... this. * daemon.am: Rename to ... * nix/local.mk: ... this. * Makefile.am: Adapt to them. * doc/guix.texi (Porting to a New Platform): Adapt documentation. * guix/config.scm.in (%state-directory, %config-directory): Adapt comments. * emacs/guix-config.el.in (guix-config-state-directory): Likewise.
2016-04-21gnu: Add acpi.Mathieu Lirzin
* gnu/packages/linux.scm (acpi): New variable.
2016-04-20substitute: Sanitize the client-provided column number.Ludovic Courtès
* guix/scripts/substitute.scm (client-terminal-columns): Sanitize the client's column number.
2016-04-20substitute: Install the client's locale.Ludovic Courtès
* guix/store.scm (set-build-options): Add #:locale parameter and honor it. * guix/scripts/substitute.scm (guix-substitute): Install the client's locale.
2016-04-20substitute: Internationalize signature and download messages.Ludovic Courtès
* guix/scripts/substitute.scm (assert-valid-narinfo): Use gettext for messages.
2016-04-20substitute: Better abbreviate substitute URL in progress report.Ludovic Courtès
Suggested by Danny Milosavljevic <dannym@scratchpost.org>. * guix/build/download.scm (nar-uri-abbreviation): New procedure. * guix/scripts/substitute.scm (process-substitution): Use it instead of 'store-path-abbreviation'.
2016-04-20download: 'uri-abbreviation' can abbreviate the URI's basename.Ludovic Courtès
* guix/build/download.scm (uri-abbreviation): Use 'ellipsis' instead of "...". Abbreviate the basename of PATH if needed.
2016-04-20doc: Add "X.509 Certificates" section under "Application Setup".Ludovic Courtès
Reported by Roel Janssen <roel@gnu.org>. * doc/guix.texi (Application Setup)[X.509 Certificates]: New section. (X.509 Certificates): Add an example of certificates in the profile.
2016-04-20gnu: python-mox3: Update to 0.14.0.Efraim Flashner
* gnu/packages/openstack.scm (python-mox3): Update to 0.14.0. [inputs]: Move python-fixtures, python-pbr, python-setuptools, python-six, python-testtools ... [native-inputs]: ... to here.
2016-04-20gnu: python-stevedore: Update to 1.12.0.Efraim Flashner
* gnu/packages/openstack.scm (python-stevedore): Update to 1.12.0. [inputs]: Move python-setuptools, python-docutils, python-mock, python-oslotest, python-sphinx ... [native-inputs]: ... to here.
2016-04-20gnu: armadillo: Update to 6.700.4.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 6.700.4.
2016-04-20download: Add "%COMPAT" to the priority string.Ludovic Courtès
Fixes <http://bugs.gnu.org/23311>. * guix/build/download.scm (tls-wrap): Add 'set-session-priorities!' call.
2016-04-19gnu: git: Update to 2.7.4 [fixes CVE-2016-2315 and CVE-2016-2324].Leo Famulari
* gnu/packages/version-control.scm (git): Update to 2.7.4. (git-manpages)[source]: Update hash.
2016-04-20gnu: aria2: Update to 1.22.0.Efraim Flashner
* gnu/packages/bittorrent.scm (aria2): Update to 1.22.0.
2016-04-19gnu: mpv: Update to 0.17.0.Efraim Flashner
* gnu/packages/video.scm (mpv): Update to 0.17.0.
2016-04-19gnu: Rename Java packages to match new naming specification.Hartmut Goebel
* gnu/packages/bioinformatics.scm (htsjdk): Rename to... (java-htsjdk): ...this. (ngs-java): Rename to... (java-ngs): ...this. (ncbi-vdb)[arguments,inputs]: Use new name. * gnu/packages/java.scm (swt): Rename to... (java-swt): ...this. * gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use new name of package "swt".
2016-04-19doc: Add specification for Java packagesHartmut Goebel
* doc/guix.texi (Java Packages): New subsection.
2016-04-19gnu: python2-plastid: Propagate setuptools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-plastid)[native-inputs]: Move python2-setuptools from here... [propagated-inputs]: ...to here.
2016-04-19gnu: r: Update to 3.2.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.2.5.
2016-04-19gnu: Add icedtea-8.Ricardo Wurmus
* gnu/packages/java.scm (icedtea-8): New variable.
2016-04-19glib: Fix tests.宋文武
* gnu/packages/glib.scm (glib)[arguments]: Disable the "/application/local-actions" test in 'disable-failing-tests' phase.
2016-04-19doc: Mention 'mkswap' during installation.Ludovic Courtès
Reported by Thierry Micoud <thierrymicoud@gmail.com>. * doc/guix.texi (Preparing for Installation): Mention 'mkswap'.
2016-04-19gnu: Add python-plastid.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New variables.
2016-04-19gnu: Add python-twobitreader.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader): New variables.
2016-04-18gnu: Add cabextract.Danny Milosavljevic
* gnu/packages/compression.scm (cabextract): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18gnu: Add dillo.Kei Yamashita
* gnu/packages/dillo.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18gnu: fltk: Add Xft support.Kei Yamashita
* gnu/packages/fltk.scm (fltk)[inputs]: Add libxft. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-18syscalls: If a syscall is not available, defer the error.Mark H Weaver
* guix/build/syscalls.scm (syscall->procedure): New procedure. (mount, umount, swapon, swapoff, clone, pivot-root): Use it. (clone): Add case for nonexistent syscall id. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-04-18utils: 'cache-directory' gracefully deals with unset 'HOME'.Ludovic Courtès
Fixes <http://bugs.gnu.org/23165>. * guix/utils.scm (cache-directory): Use 'getpwuid' when 'HOME' is unset.
2016-04-18gnu: vlc: Make 'plugins.dat' generation reproducible.Ludovic Courtès
Fixes <http://bugs.gnu.org/23307>. * gnu/packages/video.scm (vlc)[arguments]: Add #:phases.
2016-04-18gnu: vlc: Do not capture the build time.Ludovic Courtès
* gnu/packages/video.scm (vlc)[source]: Add 'snippet'.
2016-04-18gnu: vlc: Build against ffmpeg 2.8.Ludovic Courtès
Fixes <http://bugs.gnu.org/23256>. Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/packages/video.scm (vlc): Use FFMPEG-2.8 instead of FFMPEG.
2016-04-18gnu: ffmpeg: Re-add 2.8.6.Ludovic Courtès
* gnu/packages/video.scm (ffmpeg-2.8): New variable.
2016-04-18emacs: Display license info on button press in Package Info buffer.Alex Kost
* emacs/guix-ui-package.el (guix-package-license): Adjust button action to display license info instead of browsing license URL.
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