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2018-06-16gnu: Add maven-wagon-http-shared.Julien Lepiller
* gnu/packages/maven.scm (maven-wagon-http-shared): New variable.
2018-06-16gnu: Add maven-wagon-tck-http.Julien Lepiller
* gnu/packages/maven.scm (maven-wagon-tck-http): New variable.
2018-06-16gnu: Add maven-wagon-file.Julien Lepiller
* gnu/packages/maven.scm (maven-wagon-file): New variable.
2018-06-16gnu: Add maven-wagon-provider-test.Julien Lepiller
* gnu/packages/maven.scm (maven-wagon-provider-test): New variable.
2018-06-16gnu: Add maven-wagon-provider-api.Julien Lepiller
* gnu/packages/maven.scm (maven-wagon-provider-api): New variable.
2018-06-16gnu: Add maven-embedder.Julien Lepiller
* gnu/packages/maven.scm (maven-embedder): New variable.
2018-06-16gnu: Add maven-core.Julien Lepiller
* gnu/packages/maven.scm (maven-core): New variable.
2018-06-16gnu: Add java-plexus-component-metadata.Julien Lepiller
* gnu/packages/maven.scm (java-plexus-component-metadata): New variable.
2018-06-16gnu: Add maven-plugin-annotations.Julien Lepiller
* gnu/packages/maven.scm (maven-plugin-annotations): New variable.
2018-06-16gnu: Add maven-core-bootstrap.Julien Lepiller
2018-06-16gnu: Add maven-plugin-api.Julien Lepiller
* gnu/packages/maven.scm (maven-plugin-api): New variable.
2018-06-16gnu: Add java-qdox.Julien Lepiller
* gnu/packages/java.scm (java-qdox): New variable.
2018-06-16gnu: Add java-plexus-cli.Julien Lepiller
* gnu/packages/java.scm (java-plexus-cli): New variable.
2018-06-16gnu: Add java-eclipse-jetty-webapp-9.2.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-webapp-9.2): New variable.
2018-06-16gnu: Add java-eclipse-jetty-webapp.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-webapp): New variable.
2018-06-16gnu. Add java-eclipse-jetty-xml-9.2.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-xml-9.2): New variable.
2018-06-16gnu: Add java-eclipse-jetty-xml.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-xml): New variable.
2018-06-16gnu: java-eclipse-jetty-security-9.2: Ignore test error.Julien Lepiller
* gnu/packages/web.scm (java-eclipse-jetty-security-9.2)[arguments]: Ignore one failing test.
2018-06-16gnu: pigx-chipseq: Update to 0.0.16.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
2018-06-15gnu: BIND: Fix CVE-2018-5738.Leo Famulari
* gnu/packages/patches/bind-CVE-2018-5738.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dns.scm (isc-bind)[source]: Use it.
2018-06-15gnu: grub: Fix build on i686.Mark H Weaver
Fixes <https://bugs.gnu.org/31380>. * gnu/packages/bootloaders.scm (grub)[native-inputs]: Add "ld-wrapper" and "binutils". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15system: Add os-with-u-boot.Danny Milosavljevic
* gnu/system/install.scm (os-with-u-boot): New procedure. * gnu/packages/bootloaders.scm (make-u-boot-package): Export. * doc/guix.texi (Building the Installation Image for ARM Boards): New subsection.
2018-06-15gnu: Add shadowsocks.fis
* gnu/packages/networking.scm (shadowsocks): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15hydra: Make sure we add an absolute file name to the load path.Ludovic Courtès
Previously, under Cuirass, we'd add "build-aux/cuirass/../hydra/../..". But then, commit c45477d2a1a651485feede20fe0f3d15aec48b39 added this in (gnu system vm): (local-file (search-path %load-path "guix/store/schema.sql")) Since 'search-path' would not return an absolute file name, 'local-file' would try to resolve that relative to "gnu/system", leading to: ERROR: In procedure force: In procedure canonicalize-path: No such file or directory: "/gnu/store/…-guix-ce573b1/gnu/system/build-aux/cuirass/../hydra/../../guix/store/schema.sql * build-aux/hydra/gnu-system.scm <top level>: Canonicalize DIR before adding it to %LOAD-PATH.
2018-06-15offload: Fix error message in 'guix offload test'.Ludovic Courtès
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com> in <https://bugs.gnu.org/31824>. * guix/scripts/offload.scm (assert-node-has-guix): Fix typo in failure message; add missing argument.
2018-06-15gnu: cpuid: Update to 20180519.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (cpuid): Update to 20180519.
2018-06-15gnu: light: Return #t from phase.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (light)[arguments]: End ‘patch-makefile’ phase with #t.
2018-06-15gnu: light: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (light): Update to 1.1. [source]: Switch to GIT-FETCH.
2018-06-15gnu: f2fs-tools: Update to 1.10.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (f2fs-tools): Update to 1.10.0.
2018-06-15gnu: spice-protocol: Update to 0.12.14.Tobias Geerinckx-Rice
* gnu/packages/spice.scm (spice-protocol): Update to 0.12.14.
2018-06-15gnu: python-pyrfc3339: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/time.scm (python-pyrfc3339): Update to 1.1.
2018-06-15gnu: gource: Update to 0.49.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (gource): Update to 0.49.
2018-06-15gnu: perl-xml-libxml-simple: Update to 0.99.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.99.
2018-06-15gnu: fcitx-configtool: Update to 0.4.10.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx-configtool): Update to 0.4.10.
2018-06-15gnu: fcitx: Update to 4.2.9.6.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx): Update to 4.2.9.6. [native-inputs]: Add extra-cmake-modules.
2018-06-15gnu: fcitx: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx)[home-page]: Use HTTPS.
2018-06-15gnu: perl-xml-xpath: Update to 1.42.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.42.
2018-06-15gnu: perl-xml-xpath: Propagate inputs.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-xpath)[inputs]: Rename this... [propagated-inputs]: ...to this.
2018-06-15gnu: perl-xml-atom: Propagate inputs.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-atom)[inputs]: Rename to... [propagated-inputs]: ...this, and... [native-inputs]: ...remove duplicate packages from here.
2018-06-15gnu: nickle: Update to 2.81.Tobias Geerinckx-Rice
* gnu/packages/nickle.scm (nickle): Update to 2.81.
2018-06-15gnu: r-cubature: Update to 1.4.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-cubature): Update to 1.4.
2018-06-15gnu: neofetch: Update to 4.0.2.Rutger Helling
* gnu/packages/admin.scm (neofetch): Update to 4.0.2.
2018-06-15gnu: Add r-genomicinteractions.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
2018-06-15gnu: Add r-interactionset.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
2018-06-15gnu: innoextract: Update to 1.7.Rutger Helling
* gnu/packages/compression.scm (innoextract): Update to 1.7.
2018-06-15gnu: Add r-riboseqr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
2018-06-15gnu: Add r-riboprofiling.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
2018-06-15gnu: Add r-chipcomp.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
2018-06-15gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New variable.
2018-06-15gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New variable.
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